Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLCF1Q9UBD9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 AP002414.1-201ENST00000391405 1147 ntBASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 RNA5SP416-201ENST00000516838 111 ntBASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLCF1Q9UBD9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 KRT18P13-201ENST00000400056 1290 ntBASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 PTCHD3P3-201ENST00000403073 906 ntBASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 BX842568.4-201ENST00000421222 227 ntBASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 AC064836.3-201ENST00000607928 673 ntBASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 AC006538.3-201ENST00000612495 578 ntBASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.43■□□□□ 0.06
CLCF1Q9UBD9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLCF1Q9UBD9 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLCF1Q9UBD9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CLCF1Q9UBD9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLCF1Q9UBD9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLCF1Q9UBD9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLCF1Q9UBD9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms