Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC42Q96M95 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 MYCLP1-201ENST00000372451 1075 ntBASIC18.77■□□□□ 0.6
CCDC42Q96M95 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC42Q96M95 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC42Q96M95 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC42Q96M95 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC42Q96M95 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CCDC42Q96M95 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC42Q96M95 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC42Q96M95 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.77■□□□□ 0.59
CCDC42Q96M95 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC42Q96M95 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CCDC42Q96M95 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC42Q96M95 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 SLC25A1P3-201ENST00000395415 828 ntBASIC18.76■□□□□ 0.59
CCDC42Q96M95 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 BX664615.1-201ENST00000443558 458 ntBASIC18.76■□□□□ 0.59
CCDC42Q96M95 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 AC005332.3-201ENST00000589904 676 ntBASIC18.76■□□□□ 0.59
CCDC42Q96M95 AC139887.4-201ENST00000607877 719 ntBASIC18.76■□□□□ 0.59
CCDC42Q96M95 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.76■□□□□ 0.59
CCDC42Q96M95 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC42Q96M95 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC42Q96M95 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC42Q96M95 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC42Q96M95 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC42Q96M95 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC42Q96M95 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC42Q96M95 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CCDC42Q96M95 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC42Q96M95 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC42Q96M95 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CCDC42Q96M95 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC42Q96M95 AL596275.1-201ENST00000423464 877 ntBASIC18.75■□□□□ 0.59
CCDC42Q96M95 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.75■□□□□ 0.59
CCDC42Q96M95 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.75■□□□□ 0.59
CCDC42Q96M95 AL359075.1-203ENST00000462729 1002 ntBASIC18.75■□□□□ 0.59
CCDC42Q96M95 YBX1P2-201ENST00000489612 999 ntBASIC18.75■□□□□ 0.59
CCDC42Q96M95 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC42Q96M95 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms