Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HPS3Q969F9 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 BCL2-203ENST00000589955 5011 ntBASIC19.26■□□□□ 0.67
HPS3Q969F9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HPS3Q969F9 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HPS3Q969F9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HPS3Q969F9 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.25■□□□□ 0.67
HPS3Q969F9 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
HPS3Q969F9 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
HPS3Q969F9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
HPS3Q969F9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.25■□□□□ 0.67
HPS3Q969F9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.25■□□□□ 0.67
HPS3Q969F9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HPS3Q969F9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.25■□□□□ 0.67
HPS3Q969F9 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HPS3Q969F9 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.25■□□□□ 0.67
HPS3Q969F9 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.25■□□□□ 0.67
HPS3Q969F9 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HPS3Q969F9 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.25■□□□□ 0.67
HPS3Q969F9 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HPS3Q969F9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HPS3Q969F9 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HPS3Q969F9 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HPS3Q969F9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
HPS3Q969F9 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.24■□□□□ 0.67
HPS3Q969F9 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.24■□□□□ 0.67
HPS3Q969F9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HPS3Q969F9 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.24■□□□□ 0.67
HPS3Q969F9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.24■□□□□ 0.67
HPS3Q969F9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.24■□□□□ 0.67
HPS3Q969F9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.24■□□□□ 0.67
HPS3Q969F9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HPS3Q969F9 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 ABCD1P5-201ENST00000445663 754 ntBASIC19.24■□□□□ 0.67
HPS3Q969F9 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HPS3Q969F9 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.24■□□□□ 0.67
HPS3Q969F9 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.24■□□□□ 0.67
HPS3Q969F9 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.24■□□□□ 0.67
HPS3Q969F9 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HPS3Q969F9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.23■□□□□ 0.67
HPS3Q969F9 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
HPS3Q969F9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HPS3Q969F9 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.23■□□□□ 0.67
HPS3Q969F9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.23■□□□□ 0.67
HPS3Q969F9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 AC003669.1-201ENST00000334569 611 ntBASIC19.23■□□□□ 0.67
HPS3Q969F9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.23■□□□□ 0.67
HPS3Q969F9 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.23■□□□□ 0.67
HPS3Q969F9 KRT16P4-201ENST00000453883 522 ntBASIC19.23■□□□□ 0.67
HPS3Q969F9 CLEC4GP1-201ENST00000596555 870 ntBASIC19.23■□□□□ 0.67
HPS3Q969F9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.23■□□□□ 0.67
HPS3Q969F9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HPS3Q969F9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HPS3Q969F9 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.22■□□□□ 0.67
HPS3Q969F9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms