Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 TFAMP1-201ENST00000412727 736 ntBASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 AC087163.2-201ENST00000457299 853 ntBASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 TERF1P3-201ENST00000505638 1227 ntBASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 AC087641.1-201ENST00000557561 1021 ntBASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 RN7SL204P-201ENST00000582831 262 ntBASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 AP001059.3-201ENST00000619053 235 ntBASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 AL645728.2-201ENST00000641974 660 ntBASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 CROCCP3-202ENST00000420820 1947 ntBASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SLC44A3Q8N4M1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 AL135999.2-201ENST00000622438 1686 ntBASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 KRT18P32-201ENST00000424695 1287 ntBASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC44A3Q8N4M1 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 KLF2P3-201ENST00000451977 1087 ntBASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 RN7SL589P-201ENST00000481268 310 ntBASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.68■□□□□ 0.42
SLC44A3Q8N4M1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms