Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 KRT18P2-201ENST00000447938 1258 ntBASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 AC064836.3-201ENST00000607928 673 ntBASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 PRORSD1P-202ENST00000563365 2154 ntBASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SH3RF1Q7Z6J0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.86■□□□□ 0.77
SH3RF1Q7Z6J0 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 BX276092.7-203ENST00000637198 1536 ntBASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SH3RF1Q7Z6J0 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms