Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.86■■□□□ 1.25
USP54Q70EL1 AC135050.7-201ENST00000624508 2218 ntBASIC22.86■■□□□ 1.25
USP54Q70EL1 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC22.85■■□□□ 1.25
USP54Q70EL1 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC22.85■■□□□ 1.25
USP54Q70EL1 AL671277.1-201ENST00000429656 993 ntBASIC22.85■■□□□ 1.25
USP54Q70EL1 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC22.85■■□□□ 1.25
USP54Q70EL1 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC22.85■■□□□ 1.25
USP54Q70EL1 AP000842.3-202ENST00000569238 1080 ntBASIC22.85■■□□□ 1.25
USP54Q70EL1 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC22.85■■□□□ 1.25
USP54Q70EL1 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
USP54Q70EL1 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC22.85■■□□□ 1.25
USP54Q70EL1 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 AC008764.6-201ENST00000595909 2069 ntBASIC22.85■■□□□ 1.25
USP54Q70EL1 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC22.85■■□□□ 1.25
USP54Q70EL1 AC104581.1-202ENST00000635932 2618 ntBASIC22.85■■□□□ 1.25
USP54Q70EL1 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
USP54Q70EL1 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.84■■□□□ 1.25
USP54Q70EL1 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 VMA21-202ENST00000370361 693 ntTSL 5 BASIC22.84■■□□□ 1.25
USP54Q70EL1 BAD-202ENST00000394531 631 ntTSL 3 BASIC22.84■■□□□ 1.25
USP54Q70EL1 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC22.84■■□□□ 1.25
USP54Q70EL1 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC22.84■■□□□ 1.25
USP54Q70EL1 BAD-207ENST00000544785 525 ntTSL 3 BASIC22.84■■□□□ 1.25
USP54Q70EL1 AC092364.2-202ENST00000597012 1073 ntBASIC22.84■■□□□ 1.25
USP54Q70EL1 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC22.84■■□□□ 1.25
USP54Q70EL1 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
USP54Q70EL1 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
USP54Q70EL1 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 NARF-206ENST00000457415 1668 ntTSL 5 BASIC22.84■■□□□ 1.25
USP54Q70EL1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC22.84■■□□□ 1.25
USP54Q70EL1 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC22.84■■□□□ 1.25
USP54Q70EL1 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
USP54Q70EL1 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC22.84■■□□□ 1.25
USP54Q70EL1 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC22.84■■□□□ 1.25
USP54Q70EL1 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC22.84■■□□□ 1.25
USP54Q70EL1 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC22.84■■□□□ 1.25
USP54Q70EL1 AC125807.1-201ENST00000483097 614 ntBASIC22.84■■□□□ 1.25
USP54Q70EL1 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP54Q70EL1 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP54Q70EL1 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
USP54Q70EL1 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
USP54Q70EL1 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP54Q70EL1 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
USP54Q70EL1 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
USP54Q70EL1 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.24
USP54Q70EL1 AC092474.2-201ENST00000424288 719 ntBASIC22.83■■□□□ 1.24
USP54Q70EL1 AC142381.1-201ENST00000426099 345 ntBASIC22.83■■□□□ 1.24
USP54Q70EL1 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC22.83■■□□□ 1.24
USP54Q70EL1 AC087641.1-201ENST00000557561 1021 ntBASIC22.83■■□□□ 1.24
USP54Q70EL1 AC026150.2-201ENST00000564693 1156 ntBASIC22.83■■□□□ 1.24
USP54Q70EL1 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC22.83■■□□□ 1.24
USP54Q70EL1 INO80C-206ENST00000586489 594 ntTSL 3 BASIC22.83■■□□□ 1.24
USP54Q70EL1 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
USP54Q70EL1 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
USP54Q70EL1 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC22.83■■□□□ 1.24
USP54Q70EL1 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC22.83■■□□□ 1.24
USP54Q70EL1 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
USP54Q70EL1 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
USP54Q70EL1 AC012317.2-201ENST00000623305 2251 ntBASIC22.82■■□□□ 1.24
USP54Q70EL1 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
USP54Q70EL1 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
USP54Q70EL1 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
USP54Q70EL1 AC107890.1-201ENST00000422478 521 ntBASIC22.82■■□□□ 1.24
USP54Q70EL1 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC22.82■■□□□ 1.24
USP54Q70EL1 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC22.82■■□□□ 1.24
USP54Q70EL1 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC22.82■■□□□ 1.24
USP54Q70EL1 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC22.82■■□□□ 1.24
USP54Q70EL1 DUX4L27-201ENST00000554796 1261 ntBASIC22.82■■□□□ 1.24
USP54Q70EL1 PRR29-209ENST00000582540 967 ntTSL 2 BASIC22.82■■□□□ 1.24
USP54Q70EL1 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC22.82■■□□□ 1.24
USP54Q70EL1 AC008267.7-201ENST00000624570 1194 ntBASIC22.82■■□□□ 1.24
USP54Q70EL1 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC22.82■■□□□ 1.24
USP54Q70EL1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.82■■□□□ 1.24
USP54Q70EL1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
USP54Q70EL1 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
USP54Q70EL1 AC016027.1-202ENST00000607927 1699 ntBASIC22.82■■□□□ 1.24
USP54Q70EL1 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC22.82■■□□□ 1.24
USP54Q70EL1 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
USP54Q70EL1 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms