Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 LINC00265-3P-201ENST00000447588 903 ntBASIC15.84■□□□□ 0.13
NIPAL3Q6P499 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.84■□□□□ 0.13
NIPAL3Q6P499 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NIPAL3Q6P499 BX276092.7-203ENST00000637198 1536 ntBASIC15.84■□□□□ 0.13
NIPAL3Q6P499 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
NIPAL3Q6P499 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 AC005104.2-201ENST00000427818 678 ntBASIC15.83■□□□□ 0.12
NIPAL3Q6P499 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 TOB2P1-201ENST00000469761 992 ntBASIC15.83■□□□□ 0.12
NIPAL3Q6P499 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 TPSP2-201ENST00000561760 610 ntBASIC15.83■□□□□ 0.12
NIPAL3Q6P499 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 AC092119.3-201ENST00000612618 583 ntBASIC15.83■□□□□ 0.12
NIPAL3Q6P499 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.83■□□□□ 0.12
NIPAL3Q6P499 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
NIPAL3Q6P499 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 AGGF1P2-201ENST00000426656 2106 ntBASIC15.82■□□□□ 0.12
NIPAL3Q6P499 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
NIPAL3Q6P499 AL845331.1-201ENST00000424978 1190 ntBASIC15.82■□□□□ 0.12
NIPAL3Q6P499 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms