Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SRP54P61011 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.16■□□□□ 0.34
SRP54P61011 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SRP54P61011 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SRP54P61011 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SRP54P61011 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SRP54P61011 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SRP54P61011 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SRP54P61011 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.15■□□□□ 0.34
SRP54P61011 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
SRP54P61011 AC108751.1-201ENST00000490852 363 ntBASIC17.15■□□□□ 0.34
SRP54P61011 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.15■□□□□ 0.34
SRP54P61011 AC092865.5-201ENST00000545435 363 ntBASIC17.15■□□□□ 0.34
SRP54P61011 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 AL139424.1-201ENST00000607572 797 ntBASIC17.15■□□□□ 0.34
SRP54P61011 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.15■□□□□ 0.34
SRP54P61011 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SRP54P61011 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
SRP54P61011 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
SRP54P61011 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SRP54P61011 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SRP54P61011 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
SRP54P61011 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SRP54P61011 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
SRP54P61011 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.14■□□□□ 0.34
SRP54P61011 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.14■□□□□ 0.34
SRP54P61011 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.14■□□□□ 0.33
SRP54P61011 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 AC007967.2-201ENST00000432613 625 ntBASIC17.14■□□□□ 0.33
SRP54P61011 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.14■□□□□ 0.33
SRP54P61011 PGAM5P1-201ENST00000518923 814 ntBASIC17.14■□□□□ 0.33
SRP54P61011 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
SRP54P61011 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SRP54P61011 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.14■□□□□ 0.33
SRP54P61011 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SRP54P61011 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SRP54P61011 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SRP54P61011 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SRP54P61011 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SRP54P61011 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SRP54P61011 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms