Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CDH12P55289 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 AC005915.1-201ENST00000624912 2018 ntBASIC16.23■□□□□ 0.19
CDH12P55289 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH12P55289 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 LINC01311-201ENST00000565162 1445 ntBASIC16.23■□□□□ 0.19
CDH12P55289 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDH12P55289 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CDH12P55289 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH12P55289 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH12P55289 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH12P55289 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH12P55289 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH12P55289 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
CDH12P55289 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH12P55289 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH12P55289 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.23■□□□□ 0.19
CDH12P55289 LINC01023-201ENST00000606054 436 ntBASIC16.23■□□□□ 0.19
CDH12P55289 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH12P55289 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 AC116353.5-201ENST00000638148 1699 ntBASIC16.23■□□□□ 0.19
CDH12P55289 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH12P55289 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH12P55289 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CDH12P55289 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.22■□□□□ 0.19
CDH12P55289 AC005104.2-201ENST00000427818 678 ntBASIC16.22■□□□□ 0.19
CDH12P55289 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.22■□□□□ 0.19
CDH12P55289 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.22■□□□□ 0.19
CDH12P55289 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.22■□□□□ 0.19
CDH12P55289 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.22■□□□□ 0.19
CDH12P55289 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
CDH12P55289 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.22■□□□□ 0.19
CDH12P55289 GPR32P1-201ENST00000601788 811 ntBASIC16.22■□□□□ 0.19
CDH12P55289 HYMAI.1-201ENST00000620949 238 ntBASIC16.22■□□□□ 0.19
CDH12P55289 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.22■□□□□ 0.19
CDH12P55289 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 FLJ38576-201ENST00000623820 2459 ntBASIC16.22■□□□□ 0.19
CDH12P55289 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
CDH12P55289 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.22■□□□□ 0.19
CDH12P55289 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH12P55289 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH12P55289 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.21■□□□□ 0.19
CDH12P55289 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH12P55289 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDH12P55289 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.21■□□□□ 0.19
CDH12P55289 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH12P55289 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDH12P55289 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH12P55289 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.21■□□□□ 0.19
CDH12P55289 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDH12P55289 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH12P55289 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.21■□□□□ 0.19
CDH12P55289 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CDH12P55289 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CDH12P55289 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.21■□□□□ 0.19
CDH12P55289 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CDH12P55289 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms