Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGA1P17096 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGA1P17096 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGA1P17096 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HMGA1P17096 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGA1P17096 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGA1P17096 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGA1P17096 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
HMGA1P17096 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGA1P17096 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGA1P17096 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGA1P17096 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGA1P17096 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGA1P17096 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGA1P17096 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGA1P17096 FAM58CP-201ENST00000435741 640 ntBASIC17.91■□□□□ 0.46
HMGA1P17096 CEND1P1-201ENST00000451006 455 ntBASIC17.91■□□□□ 0.46
HMGA1P17096 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGA1P17096 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGA1P17096 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGA1P17096 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGA1P17096 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HMGA1P17096 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HMGA1P17096 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.91■□□□□ 0.46
HMGA1P17096 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGA1P17096 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGA1P17096 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
HMGA1P17096 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGA1P17096 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 SLC25A1P3-201ENST00000395415 828 ntBASIC17.9■□□□□ 0.46
HMGA1P17096 AC254562.1-201ENST00000417586 456 ntBASIC17.9■□□□□ 0.46
HMGA1P17096 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGA1P17096 AL513480.1-201ENST00000451731 511 ntBASIC17.9■□□□□ 0.46
HMGA1P17096 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 AP002472.1-201ENST00000577490 586 ntBASIC17.9■□□□□ 0.46
HMGA1P17096 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 AC091812.2-201ENST00000619081 385 ntBASIC17.9■□□□□ 0.46
HMGA1P17096 AC092902.6-201ENST00000641783 218 ntBASIC17.9■□□□□ 0.46
HMGA1P17096 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HMGA1P17096 AC092919.2-201ENST00000623631 1645 ntBASIC17.9■□□□□ 0.46
HMGA1P17096 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HMGA1P17096 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 AC134043.2-201ENST00000624206 2238 ntBASIC17.9■□□□□ 0.46
HMGA1P17096 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGA1P17096 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.46
HMGA1P17096 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HMGA1P17096 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGA1P17096 PMS2P2-201ENST00000425039 1128 ntBASIC17.89■□□□□ 0.45
HMGA1P17096 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGA1P17096 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.89■□□□□ 0.45
HMGA1P17096 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGA1P17096 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGA1P17096 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGA1P17096 REXO1L3P-201ENST00000622202 1288 ntBASIC17.89■□□□□ 0.45
HMGA1P17096 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGA1P17096 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGA1P17096 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGA1P17096 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGA1P17096 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGA1P17096 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HMGA1P17096 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGA1P17096 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGA1P17096 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGA1P17096 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms