Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.78■□□□□ 0.44
VCANP13611 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.78■□□□□ 0.44
VCANP13611 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.78■□□□□ 0.44
VCANP13611 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.78■□□□□ 0.44
VCANP13611 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.78■□□□□ 0.44
VCANP13611 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC17.78■□□□□ 0.44
VCANP13611 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.78■□□□□ 0.44
VCANP13611 AC004840.1-201ENST00000636359 365 ntBASIC17.78■□□□□ 0.44
VCANP13611 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.78■□□□□ 0.44
VCANP13611 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.78■□□□□ 0.44
VCANP13611 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.78■□□□□ 0.44
VCANP13611 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
VCANP13611 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.77■□□□□ 0.44
VCANP13611 KRT223P-202ENST00000449164 1292 ntBASIC17.77■□□□□ 0.44
VCANP13611 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VCANP13611 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
VCANP13611 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
VCANP13611 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.77■□□□□ 0.44
VCANP13611 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
VCANP13611 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.77■□□□□ 0.44
VCANP13611 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.77■□□□□ 0.44
VCANP13611 WASH4P-201ENST00000564273 1246 ntBASIC17.77■□□□□ 0.44
VCANP13611 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.77■□□□□ 0.44
VCANP13611 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.77■□□□□ 0.44
VCANP13611 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCANP13611 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
VCANP13611 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.77■□□□□ 0.43
VCANP13611 AC104581.1-202ENST00000635932 2618 ntBASIC17.77■□□□□ 0.43
VCANP13611 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCANP13611 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
VCANP13611 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
VCANP13611 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.77■□□□□ 0.43
VCANP13611 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.77■□□□□ 0.43
VCANP13611 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.77■□□□□ 0.43
VCANP13611 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.77■□□□□ 0.43
VCANP13611 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.77■□□□□ 0.43
VCANP13611 CTBP2P3-201ENST00000585629 1255 ntBASIC17.77■□□□□ 0.43
VCANP13611 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.77■□□□□ 0.43
VCANP13611 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VCANP13611 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.76■□□□□ 0.43
VCANP13611 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VCANP13611 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 AC104457.1-201ENST00000401024 814 ntBASIC17.76■□□□□ 0.43
VCANP13611 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VCANP13611 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 CHCHD2P3-201ENST00000603038 451 ntBASIC17.76■□□□□ 0.43
VCANP13611 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VCANP13611 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.76■□□□□ 0.43
VCANP13611 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 SLC25A24-204ENST00000569674 2357 ntBASIC17.76■□□□□ 0.43
VCANP13611 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.76■□□□□ 0.43
VCANP13611 AC008738.7-201ENST00000609744 511 ntBASIC17.76■□□□□ 0.43
VCANP13611 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VCANP13611 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.76■□□□□ 0.43
VCANP13611 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.76■□□□□ 0.43
VCANP13611 RPS2P36-201ENST00000456516 831 ntBASIC17.76■□□□□ 0.43
VCANP13611 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.76■□□□□ 0.43
VCANP13611 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCANP13611 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
VCANP13611 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.75■□□□□ 0.43
VCANP13611 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.75■□□□□ 0.43
VCANP13611 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.75■□□□□ 0.43
VCANP13611 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.75■□□□□ 0.43
VCANP13611 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.75■□□□□ 0.43
VCANP13611 HNRNPUP1-201ENST00000554987 333 ntBASIC17.75■□□□□ 0.43
VCANP13611 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VCANP13611 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms