Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 MIR3180-1-201ENST00000580374 94 ntBASIC17.46■□□□□ 0.39
TRIM4Q9C037 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 MIR3180-3-201ENST00000584616 94 ntBASIC17.46■□□□□ 0.39
TRIM4Q9C037 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 PCDHB19P-201ENST00000570871 2371 ntBASIC17.46■□□□□ 0.39
TRIM4Q9C037 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM4Q9C037 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM4Q9C037 AC093677.2-201ENST00000600169 1863 ntBASIC17.46■□□□□ 0.38
TRIM4Q9C037 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
TRIM4Q9C037 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 BX276092.5-203ENST00000456199 560 ntBASIC17.45■□□□□ 0.38
TRIM4Q9C037 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 AC008741.2-201ENST00000612792 3115 ntBASIC17.45■□□□□ 0.38
TRIM4Q9C037 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM4Q9C037 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM4Q9C037 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 HYMAI-201ENST00000635591 3347 ntBASIC17.44■□□□□ 0.38
TRIM4Q9C037 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 CA15P1-201ENST00000481698 905 ntBASIC17.44■□□□□ 0.38
TRIM4Q9C037 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 AP002414.4-201ENST00000589764 1148 ntBASIC17.44■□□□□ 0.38
TRIM4Q9C037 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM4Q9C037 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM4Q9C037 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms