Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 MED16-201ENST00000269814 1199 ntTSL 5 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 SOD2-201ENST00000337404 991 ntTSL 2 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 COX5BP2-201ENST00000392354 334 ntBASIC12.15□□□□□ -0.46
UPK3BQ9BT76 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 DDX43P3-201ENST00000441064 443 ntBASIC12.15□□□□□ -0.46
UPK3BQ9BT76 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 PPIE-208ENST00000470213 927 ntTSL 3 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 AC084018.2-201ENST00000613093 2607 ntBASIC12.15□□□□□ -0.46
UPK3BQ9BT76 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC12.15□□□□□ -0.46
UPK3BQ9BT76 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
UPK3BQ9BT76 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.47
UPK3BQ9BT76 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
UPK3BQ9BT76 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
UPK3BQ9BT76 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 AC135776.1-201ENST00000319817 2481 ntBASIC12.14□□□□□ -0.47
UPK3BQ9BT76 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 AP005117.1-201ENST00000584346 1413 ntBASIC12.14□□□□□ -0.47
UPK3BQ9BT76 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.14□□□□□ -0.47
UPK3BQ9BT76 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 AL139288.1-201ENST00000623748 933 ntBASIC12.14□□□□□ -0.47
UPK3BQ9BT76 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 FLJ13224-201ENST00000313737 1514 ntBASIC12.14□□□□□ -0.47
UPK3BQ9BT76 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms