Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC092865.6-201ENST00000642101 219 ntBASIC16.9■□□□□ 0.3
HOXC4P09017 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.9■□□□□ 0.3
HOXC4P09017 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
HOXC4P09017 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC4P09017 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
HOXC4P09017 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
HOXC4P09017 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.3
HOXC4P09017 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC4P09017 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HOXC4P09017 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
HOXC4P09017 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.89■□□□□ 0.29
HOXC4P09017 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.89■□□□□ 0.29
HOXC4P09017 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.89■□□□□ 0.29
HOXC4P09017 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
HOXC4P09017 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.89■□□□□ 0.29
HOXC4P09017 AC018845.2-201ENST00000568326 409 ntBASIC16.89■□□□□ 0.29
HOXC4P09017 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXC4P09017 AC023141.13-201ENST00000604991 943 ntBASIC16.89■□□□□ 0.29
HOXC4P09017 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.89■□□□□ 0.29
HOXC4P09017 AC004877.2-201ENST00000623941 599 ntBASIC16.89■□□□□ 0.29
HOXC4P09017 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC4P09017 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC4P09017 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HOXC4P09017 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC4P09017 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HOXC4P09017 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 NOC2LP2-201ENST00000407594 1944 ntBASIC16.88■□□□□ 0.29
HOXC4P09017 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXC4P09017 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HOXC4P09017 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
HOXC4P09017 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
HOXC4P09017 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.88■□□□□ 0.29
HOXC4P09017 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXC4P09017 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.88■□□□□ 0.29
HOXC4P09017 KRT19P2-202ENST00000557173 1012 ntBASIC16.88■□□□□ 0.29
HOXC4P09017 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.88■□□□□ 0.29
HOXC4P09017 PDPK2P-202ENST00000562415 1191 ntBASIC16.88■□□□□ 0.29
HOXC4P09017 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXC4P09017 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.88■□□□□ 0.29
HOXC4P09017 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXC4P09017 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.88■□□□□ 0.29
HOXC4P09017 AC134043.2-201ENST00000624206 2238 ntBASIC16.88■□□□□ 0.29
HOXC4P09017 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HOXC4P09017 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.88■□□□□ 0.29
HOXC4P09017 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.88■□□□□ 0.29
HOXC4P09017 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HOXC4P09017 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.87■□□□□ 0.29
HOXC4P09017 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.87■□□□□ 0.29
HOXC4P09017 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.87■□□□□ 0.29
HOXC4P09017 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.87■□□□□ 0.29
HOXC4P09017 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.87■□□□□ 0.29
HOXC4P09017 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 AC010327.4-202ENST00000591484 748 ntBASIC16.87■□□□□ 0.29
HOXC4P09017 C20orf181-201ENST00000623918 480 ntBASIC16.87■□□□□ 0.29
HOXC4P09017 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.87■□□□□ 0.29
HOXC4P09017 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
HOXC4P09017 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HOXC4P09017 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HOXC4P09017 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.87■□□□□ 0.29
HOXC4P09017 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HOXC4P09017 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXC4P09017 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXC4P09017 EGFEM1P-202ENST00000431685 1563 ntBASIC16.86■□□□□ 0.29
HOXC4P09017 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
HOXC4P09017 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms