Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.56■□□□□ 0.4
VIMP08670 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.56■□□□□ 0.4
VIMP08670 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
VIMP08670 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VIMP08670 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.56■□□□□ 0.4
VIMP08670 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VIMP08670 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 AC068587.6-202ENST00000641839 5619 ntBASIC17.55■□□□□ 0.4
VIMP08670 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VIMP08670 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.55■□□□□ 0.4
VIMP08670 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.55■□□□□ 0.4
VIMP08670 MIR6786-201ENST00000616843 113 ntBASIC17.55■□□□□ 0.4
VIMP08670 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.55■□□□□ 0.4
VIMP08670 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.55■□□□□ 0.4
VIMP08670 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 AC078925.2-201ENST00000624013 1973 ntBASIC17.55■□□□□ 0.4
VIMP08670 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.55■□□□□ 0.4
VIMP08670 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.55■□□□□ 0.4
VIMP08670 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VIMP08670 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VIMP08670 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.54■□□□□ 0.4
VIMP08670 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VIMP08670 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VIMP08670 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.54■□□□□ 0.4
VIMP08670 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 DDX43P3-201ENST00000441064 443 ntBASIC17.54■□□□□ 0.4
VIMP08670 B3GAT3P1-201ENST00000471720 806 ntBASIC17.54■□□□□ 0.4
VIMP08670 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.54■□□□□ 0.4
VIMP08670 AP000692.2-201ENST00000608391 879 ntBASIC17.54■□□□□ 0.4
VIMP08670 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VIMP08670 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.54■□□□□ 0.4
VIMP08670 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.54■□□□□ 0.4
VIMP08670 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VIMP08670 AC022188.1-201ENST00000620960 1664 ntBASIC17.54■□□□□ 0.4
VIMP08670 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.54■□□□□ 0.4
VIMP08670 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.53■□□□□ 0.4
VIMP08670 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.53■□□□□ 0.4
VIMP08670 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
VIMP08670 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VIMP08670 MIR4674-201ENST00000582457 87 ntBASIC17.53■□□□□ 0.4
VIMP08670 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VIMP08670 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms