Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
COL1A1P02452 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.79■□□□□ 0.92
COL1A1P02452 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL1A1P02452 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL1A1P02452 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.79■□□□□ 0.92
COL1A1P02452 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COL1A1P02452 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL1A1P02452 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL1A1P02452 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL1A1P02452 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.78■□□□□ 0.92
COL1A1P02452 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.78■□□□□ 0.92
COL1A1P02452 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL1A1P02452 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.78■□□□□ 0.92
COL1A1P02452 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL1A1P02452 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
COL1A1P02452 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL1A1P02452 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL1A1P02452 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.78■□□□□ 0.92
COL1A1P02452 RPL28-205ENST00000558131 444 ntTSL 5 BASIC20.78■□□□□ 0.92
COL1A1P02452 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
COL1A1P02452 AC092364.2-202ENST00000597012 1073 ntBASIC20.78■□□□□ 0.92
COL1A1P02452 AC068137.2-201ENST00000605408 478 ntBASIC20.78■□□□□ 0.92
COL1A1P02452 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.78■□□□□ 0.92
COL1A1P02452 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.78■□□□□ 0.92
COL1A1P02452 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL1A1P02452 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL1A1P02452 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL1A1P02452 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20.77■□□□□ 0.92
COL1A1P02452 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.77■□□□□ 0.92
COL1A1P02452 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.77■□□□□ 0.92
COL1A1P02452 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC20.77■□□□□ 0.92
COL1A1P02452 FAM185BP-201ENST00000443595 716 ntBASIC20.77■□□□□ 0.92
COL1A1P02452 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC20.77■□□□□ 0.92
COL1A1P02452 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC20.77■□□□□ 0.92
COL1A1P02452 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC20.77■□□□□ 0.92
COL1A1P02452 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.77■□□□□ 0.92
COL1A1P02452 AC093028.1-201ENST00000622998 982 ntBASIC20.77■□□□□ 0.92
COL1A1P02452 AL513210.1-201ENST00000629608 234 ntBASIC20.77■□□□□ 0.92
COL1A1P02452 AC092902.6-201ENST00000641783 218 ntBASIC20.77■□□□□ 0.92
COL1A1P02452 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.77■□□□□ 0.92
COL1A1P02452 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL1A1P02452 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL1A1P02452 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL1A1P02452 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.77■□□□□ 0.91
COL1A1P02452 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.76■□□□□ 0.91
COL1A1P02452 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.76■□□□□ 0.91
COL1A1P02452 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.76■□□□□ 0.91
COL1A1P02452 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL1A1P02452 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.76■□□□□ 0.91
COL1A1P02452 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.76■□□□□ 0.91
COL1A1P02452 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC20.76■□□□□ 0.91
COL1A1P02452 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.76■□□□□ 0.91
COL1A1P02452 AC023141.13-201ENST00000604991 943 ntBASIC20.76■□□□□ 0.91
COL1A1P02452 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.76■□□□□ 0.91
COL1A1P02452 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.76■□□□□ 0.91
COL1A1P02452 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.76■□□□□ 0.91
COL1A1P02452 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.76■□□□□ 0.91
COL1A1P02452 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.76■□□□□ 0.91
COL1A1P02452 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL1A1P02452 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.76■□□□□ 0.91
COL1A1P02452 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL1A1P02452 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.76■□□□□ 0.91
COL1A1P02452 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.76■□□□□ 0.91
COL1A1P02452 AC134043.2-201ENST00000624206 2238 ntBASIC20.75■□□□□ 0.91
COL1A1P02452 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
COL1A1P02452 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL1A1P02452 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.75■□□□□ 0.91
COL1A1P02452 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.75■□□□□ 0.91
COL1A1P02452 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.75■□□□□ 0.91
COL1A1P02452 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
COL1A1P02452 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.75■□□□□ 0.91
COL1A1P02452 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
COL1A1P02452 REXO1L3P-201ENST00000622202 1288 ntBASIC20.75■□□□□ 0.91
COL1A1P02452 AC007064.4-201ENST00000637740 555 ntBASIC20.75■□□□□ 0.91
COL1A1P02452 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
COL1A1P02452 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL1A1P02452 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL1A1P02452 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL1A1P02452 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL1A1P02452 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL1A1P02452 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms