Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HMGB3O15347 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HMGB3O15347 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC14.07□□□□□ -0.16
HMGB3O15347 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 AC132872.4-202ENST00000622924 2756 ntBASIC14.06□□□□□ -0.16
HMGB3O15347 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
HMGB3O15347 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.06□□□□□ -0.16
HMGB3O15347 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC14.06□□□□□ -0.16
HMGB3O15347 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HMGB3O15347 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC14.06□□□□□ -0.16
HMGB3O15347 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC14.06□□□□□ -0.16
HMGB3O15347 RARRES2P6-201ENST00000567333 442 ntBASIC14.06□□□□□ -0.16
HMGB3O15347 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.06□□□□□ -0.16
HMGB3O15347 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC14.06□□□□□ -0.16
HMGB3O15347 AC011298.2-201ENST00000617989 482 ntBASIC14.06□□□□□ -0.16
HMGB3O15347 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
HMGB3O15347 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HMGB3O15347 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HMGB3O15347 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HMGB3O15347 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HMGB3O15347 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC14.06□□□□□ -0.16
HMGB3O15347 PCDHA1-201ENST00000378133 2726 ntBASIC14.06□□□□□ -0.16
HMGB3O15347 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.06□□□□□ -0.16
HMGB3O15347 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 AC060834.1-201ENST00000443027 2032 ntBASIC14.05□□□□□ -0.16
HMGB3O15347 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HMGB3O15347 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HMGB3O15347 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.05□□□□□ -0.16
HMGB3O15347 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC14.05□□□□□ -0.16
HMGB3O15347 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.05□□□□□ -0.16
HMGB3O15347 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 KRASP1-201ENST00000407852 552 ntBASIC14.05□□□□□ -0.16
HMGB3O15347 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC14.05□□□□□ -0.16
HMGB3O15347 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC14.05□□□□□ -0.16
HMGB3O15347 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
HMGB3O15347 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC14.05□□□□□ -0.16
HMGB3O15347 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 AL023875.1-201ENST00000640777 796 ntBASIC14.05□□□□□ -0.16
HMGB3O15347 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.05□□□□□ -0.16
HMGB3O15347 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
HMGB3O15347 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HMGB3O15347 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 NRXN1-210ENST00000406316 9375 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
HMGB3O15347 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.05□□□□□ -0.16
HMGB3O15347 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HMGB3O15347 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
HMGB3O15347 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HMGB3O15347 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.04□□□□□ -0.16
HMGB3O15347 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HMGB3O15347 LINC00304-203ENST00000565008 1864 ntBASIC14.04□□□□□ -0.16
HMGB3O15347 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms