Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AKR1C7P-201ENST00000305623 895 ntBASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 ABCD1P5-201ENST00000445663 754 ntBASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AL121912.1-201ENST00000603683 238 ntBASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AC073592.5-201ENST00000624854 528 ntBASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AC132938.5-201ENST00000624980 1813 ntBASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 PMPCAP1-201ENST00000508114 1576 ntBASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 AC120114.3-201ENST00000611923 658 ntBASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 AL139327.4-201ENST00000612362 153 ntBASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 AP000867.4-201ENST00000641616 219 ntBASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CUEDC1Q9NWM3 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
CUEDC1Q9NWM3 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.86■□□□□ 0.29
CUEDC1Q9NWM3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.86■□□□□ 0.29
CUEDC1Q9NWM3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CUEDC1Q9NWM3 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.86■□□□□ 0.29
CUEDC1Q9NWM3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CUEDC1Q9NWM3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms