Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
USP38Q8NB14 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP38Q8NB14 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
USP38Q8NB14 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 REXO1L9P-201ENST00000604264 2108 ntBASIC19.46■□□□□ 0.71
USP38Q8NB14 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.46■□□□□ 0.71
USP38Q8NB14 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 SIGLEC16-201ENST00000599858 1437 ntBASIC19.46■□□□□ 0.71
USP38Q8NB14 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.46■□□□□ 0.71
USP38Q8NB14 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.46■□□□□ 0.71
USP38Q8NB14 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
USP38Q8NB14 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.46■□□□□ 0.71
USP38Q8NB14 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
USP38Q8NB14 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP38Q8NB14 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.46■□□□□ 0.71
USP38Q8NB14 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
USP38Q8NB14 AC010460.3-201ENST00000511359 1579 ntBASIC19.45■□□□□ 0.7
USP38Q8NB14 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.45■□□□□ 0.7
USP38Q8NB14 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 AC139713.2-201ENST00000641328 2723 ntBASIC19.45■□□□□ 0.7
USP38Q8NB14 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP38Q8NB14 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP38Q8NB14 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.45■□□□□ 0.7
USP38Q8NB14 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.45■□□□□ 0.7
USP38Q8NB14 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
USP38Q8NB14 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.45■□□□□ 0.7
USP38Q8NB14 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.45■□□□□ 0.7
USP38Q8NB14 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.45■□□□□ 0.7
USP38Q8NB14 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.45■□□□□ 0.7
USP38Q8NB14 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.45■□□□□ 0.7
USP38Q8NB14 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.45■□□□□ 0.7
USP38Q8NB14 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.45■□□□□ 0.7
USP38Q8NB14 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP38Q8NB14 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP38Q8NB14 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.45■□□□□ 0.7
USP38Q8NB14 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.45■□□□□ 0.7
USP38Q8NB14 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP38Q8NB14 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 PHGDH-209ENST00000641074 1780 ntBASIC19.44■□□□□ 0.7
USP38Q8NB14 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.44■□□□□ 0.7
USP38Q8NB14 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
USP38Q8NB14 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.44■□□□□ 0.7
USP38Q8NB14 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
USP38Q8NB14 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
USP38Q8NB14 COX5BP2-201ENST00000392354 334 ntBASIC19.44■□□□□ 0.7
USP38Q8NB14 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.44■□□□□ 0.7
USP38Q8NB14 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.44■□□□□ 0.7
USP38Q8NB14 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.44■□□□□ 0.7
USP38Q8NB14 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.44■□□□□ 0.7
USP38Q8NB14 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.44■□□□□ 0.7
USP38Q8NB14 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.44■□□□□ 0.7
USP38Q8NB14 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP38Q8NB14 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms