Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.82■□□□□ 0.6
KRT39Q6A163 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
KRT39Q6A163 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.82■□□□□ 0.6
KRT39Q6A163 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
KRT39Q6A163 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.82■□□□□ 0.6
KRT39Q6A163 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
KRT39Q6A163 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.82■□□□□ 0.6
KRT39Q6A163 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.82■□□□□ 0.6
KRT39Q6A163 SPDYE21P-201ENST00000413323 827 ntBASIC18.82■□□□□ 0.6
KRT39Q6A163 AL020989.1-201ENST00000422979 469 ntBASIC18.82■□□□□ 0.6
KRT39Q6A163 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.82■□□□□ 0.6
KRT39Q6A163 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
KRT39Q6A163 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.82■□□□□ 0.6
KRT39Q6A163 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.82■□□□□ 0.6
KRT39Q6A163 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.82■□□□□ 0.6
KRT39Q6A163 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.82■□□□□ 0.6
KRT39Q6A163 CLEC4GP1-201ENST00000596555 870 ntBASIC18.82■□□□□ 0.6
KRT39Q6A163 AL732292.2-201ENST00000609649 430 ntBASIC18.82■□□□□ 0.6
KRT39Q6A163 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.82■□□□□ 0.6
KRT39Q6A163 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.82■□□□□ 0.6
KRT39Q6A163 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
KRT39Q6A163 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
KRT39Q6A163 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
KRT39Q6A163 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
KRT39Q6A163 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.81■□□□□ 0.6
KRT39Q6A163 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.81■□□□□ 0.6
KRT39Q6A163 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.81■□□□□ 0.6
KRT39Q6A163 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
KRT39Q6A163 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.81■□□□□ 0.6
KRT39Q6A163 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.81■□□□□ 0.6
KRT39Q6A163 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.81■□□□□ 0.6
KRT39Q6A163 AC106795.1-205ENST00000512851 1056 ntBASIC18.81■□□□□ 0.6
KRT39Q6A163 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.81■□□□□ 0.6
KRT39Q6A163 AC073592.4-201ENST00000623827 446 ntBASIC18.81■□□□□ 0.6
KRT39Q6A163 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.81■□□□□ 0.6
KRT39Q6A163 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.81■□□□□ 0.6
KRT39Q6A163 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 AL135999.2-201ENST00000622438 1686 ntBASIC18.81■□□□□ 0.6
KRT39Q6A163 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 SIGLEC16-201ENST00000599858 1437 ntBASIC18.81■□□□□ 0.6
KRT39Q6A163 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.81■□□□□ 0.6
KRT39Q6A163 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
KRT39Q6A163 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
KRT39Q6A163 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
KRT39Q6A163 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
KRT39Q6A163 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
KRT39Q6A163 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.8■□□□□ 0.6
KRT39Q6A163 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
KRT39Q6A163 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.8■□□□□ 0.6
KRT39Q6A163 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
KRT39Q6A163 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
KRT39Q6A163 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
KRT39Q6A163 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.8■□□□□ 0.6
KRT39Q6A163 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.8■□□□□ 0.6
KRT39Q6A163 SIGLEC30P-201ENST00000455569 941 ntBASIC18.8■□□□□ 0.6
KRT39Q6A163 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
KRT39Q6A163 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.8■□□□□ 0.6
KRT39Q6A163 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.8■□□□□ 0.6
KRT39Q6A163 AC012313.10-201ENST00000623509 926 ntBASIC18.8■□□□□ 0.6
KRT39Q6A163 AC148477.5-201ENST00000625164 1645 ntBASIC18.8■□□□□ 0.6
KRT39Q6A163 AC079776.2-201ENST00000641154 1609 ntBASIC18.8■□□□□ 0.6
KRT39Q6A163 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms