Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.66■□□□□ 0.42
RPA3P35244 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
RPA3P35244 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RPA3P35244 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.66■□□□□ 0.42
RPA3P35244 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
RPA3P35244 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.66■□□□□ 0.42
RPA3P35244 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.66■□□□□ 0.42
RPA3P35244 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RPA3P35244 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.66■□□□□ 0.42
RPA3P35244 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
RPA3P35244 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RPA3P35244 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
RPA3P35244 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.66■□□□□ 0.42
RPA3P35244 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.66■□□□□ 0.42
RPA3P35244 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RPA3P35244 KRT8P47-201ENST00000604727 1398 ntBASIC17.66■□□□□ 0.42
RPA3P35244 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.65■□□□□ 0.42
RPA3P35244 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 AC116353.5-201ENST00000638148 1699 ntBASIC17.65■□□□□ 0.42
RPA3P35244 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
RPA3P35244 HLA-F-220ENST00000434407 884 ntBASIC17.65■□□□□ 0.42
RPA3P35244 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.65■□□□□ 0.42
RPA3P35244 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.65■□□□□ 0.42
RPA3P35244 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.65■□□□□ 0.42
RPA3P35244 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.65■□□□□ 0.42
RPA3P35244 AC087388.1-201ENST00000571370 1112 ntBASIC17.65■□□□□ 0.42
RPA3P35244 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RPA3P35244 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.65■□□□□ 0.42
RPA3P35244 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
RPA3P35244 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
RPA3P35244 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.64■□□□□ 0.41
RPA3P35244 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.64■□□□□ 0.41
RPA3P35244 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
RPA3P35244 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.64■□□□□ 0.41
RPA3P35244 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.64■□□□□ 0.41
RPA3P35244 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.64■□□□□ 0.41
RPA3P35244 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.64■□□□□ 0.41
RPA3P35244 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.64■□□□□ 0.41
RPA3P35244 ZNF444P1-201ENST00000559497 298 ntBASIC17.64■□□□□ 0.41
RPA3P35244 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.64■□□□□ 0.41
RPA3P35244 AC024563.2-201ENST00000603282 481 ntBASIC17.64■□□□□ 0.41
RPA3P35244 AC010331.1-201ENST00000611423 582 ntBASIC17.64■□□□□ 0.41
RPA3P35244 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.64■□□□□ 0.41
RPA3P35244 HYMAI.1-201ENST00000620949 238 ntBASIC17.64■□□□□ 0.41
RPA3P35244 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.64■□□□□ 0.41
RPA3P35244 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
RPA3P35244 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RPA3P35244 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
RPA3P35244 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RPA3P35244 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RPA3P35244 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RPA3P35244 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
RPA3P35244 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RPA3P35244 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RPA3P35244 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RPA3P35244 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RPA3P35244 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms