Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.8□□□□□ -0.04
USF1P22415 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.8□□□□□ -0.04
USF1P22415 UNC93B6-202ENST00000528242 690 ntBASIC14.8□□□□□ -0.04
USF1P22415 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.8□□□□□ -0.04
USF1P22415 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.8□□□□□ -0.04
USF1P22415 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.8□□□□□ -0.04
USF1P22415 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.8□□□□□ -0.04
USF1P22415 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.8□□□□□ -0.04
USF1P22415 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
USF1P22415 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC14.8□□□□□ -0.04
USF1P22415 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.8□□□□□ -0.04
USF1P22415 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.8□□□□□ -0.04
USF1P22415 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
USF1P22415 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.8□□□□□ -0.04
USF1P22415 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.8□□□□□ -0.04
USF1P22415 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
USF1P22415 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14.8□□□□□ -0.04
USF1P22415 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.8□□□□□ -0.04
USF1P22415 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
USF1P22415 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USF1P22415 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
USF1P22415 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.79□□□□□ -0.04
USF1P22415 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.79□□□□□ -0.04
USF1P22415 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.79□□□□□ -0.04
USF1P22415 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.79□□□□□ -0.04
USF1P22415 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.79□□□□□ -0.04
USF1P22415 BX005266.1-201ENST00000473402 457 ntBASIC14.79□□□□□ -0.04
USF1P22415 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC14.79□□□□□ -0.04
USF1P22415 AC122714.2-201ENST00000502787 707 ntBASIC14.79□□□□□ -0.04
USF1P22415 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.79□□□□□ -0.04
USF1P22415 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.79□□□□□ -0.04
USF1P22415 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.79□□□□□ -0.04
USF1P22415 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 AP002414.3-201ENST00000589352 1468 ntBASIC14.79□□□□□ -0.04
USF1P22415 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.79□□□□□ -0.04
USF1P22415 AC079776.2-201ENST00000641154 1609 ntBASIC14.79□□□□□ -0.04
USF1P22415 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USF1P22415 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC14.79□□□□□ -0.04
USF1P22415 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.79□□□□□ -0.04
USF1P22415 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC14.79□□□□□ -0.04
USF1P22415 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.78□□□□□ -0.04
USF1P22415 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
USF1P22415 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
USF1P22415 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
USF1P22415 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.78□□□□□ -0.04
USF1P22415 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.78□□□□□ -0.04
USF1P22415 AC096633.1-201ENST00000422446 749 ntBASIC14.78□□□□□ -0.04
USF1P22415 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.78□□□□□ -0.04
USF1P22415 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 AC010327.4-202ENST00000591484 748 ntBASIC14.78□□□□□ -0.04
USF1P22415 AC006557.2-201ENST00000592985 1240 ntBASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms