Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.38■□□□□ 0.37
MSH3P20585 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH3P20585 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MSH3P20585 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH3P20585 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH3P20585 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.37■□□□□ 0.37
MSH3P20585 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.37■□□□□ 0.37
MSH3P20585 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH3P20585 KRT126P-201ENST00000549467 1181 ntBASIC17.37■□□□□ 0.37
MSH3P20585 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.37■□□□□ 0.37
MSH3P20585 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.37■□□□□ 0.37
MSH3P20585 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.37■□□□□ 0.37
MSH3P20585 AD001527.2-201ENST00000622994 785 ntBASIC17.37■□□□□ 0.37
MSH3P20585 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH3P20585 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH3P20585 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
MSH3P20585 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH3P20585 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
MSH3P20585 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
MSH3P20585 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.36■□□□□ 0.37
MSH3P20585 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
MSH3P20585 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.36■□□□□ 0.37
MSH3P20585 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 AL691432.3-201ENST00000621860 400 ntBASIC17.36■□□□□ 0.37
MSH3P20585 AC073592.5-201ENST00000624854 528 ntBASIC17.36■□□□□ 0.37
MSH3P20585 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.36■□□□□ 0.37
MSH3P20585 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
MSH3P20585 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
MSH3P20585 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSH3P20585 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 AL353593.2-201ENST00000602529 1483 ntBASIC17.36■□□□□ 0.37
MSH3P20585 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH3P20585 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.36■□□□□ 0.37
MSH3P20585 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
MSH3P20585 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
MSH3P20585 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH3P20585 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH3P20585 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.35■□□□□ 0.37
MSH3P20585 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.35■□□□□ 0.37
MSH3P20585 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH3P20585 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH3P20585 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH3P20585 AP001269.4-201ENST00000609611 512 ntBASIC17.35■□□□□ 0.37
MSH3P20585 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.35■□□□□ 0.37
MSH3P20585 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
MSH3P20585 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms