Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB1P09429 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGB1P09429 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGB1P09429 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
HMGB1P09429 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.56■□□□□ 0.88
HMGB1P09429 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.56■□□□□ 0.88
HMGB1P09429 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.56■□□□□ 0.88
HMGB1P09429 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
HMGB1P09429 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGB1P09429 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGB1P09429 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
HMGB1P09429 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
HMGB1P09429 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGB1P09429 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB1P09429 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HMGB1P09429 LINC02012-201ENST00000608206 1725 ntBASIC20.56■□□□□ 0.88
HMGB1P09429 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HMGB1P09429 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
HMGB1P09429 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HMGB1P09429 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HMGB1P09429 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.55■□□□□ 0.88
HMGB1P09429 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
HMGB1P09429 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.55■□□□□ 0.88
HMGB1P09429 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.55■□□□□ 0.88
HMGB1P09429 AL020989.1-201ENST00000422979 469 ntBASIC20.55■□□□□ 0.88
HMGB1P09429 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB1P09429 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.55■□□□□ 0.88
HMGB1P09429 MIR3652-201ENST00000579335 131 ntBASIC20.55■□□□□ 0.88
HMGB1P09429 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGB1P09429 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB1P09429 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HMGB1P09429 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.55■□□□□ 0.88
HMGB1P09429 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB1P09429 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGB1P09429 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB1P09429 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB1P09429 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGB1P09429 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB1P09429 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.54■□□□□ 0.88
HMGB1P09429 SIGLEC16-201ENST00000599858 1437 ntBASIC20.54■□□□□ 0.88
HMGB1P09429 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HMGB1P09429 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 AL121761.2-201ENST00000598007 1648 ntBASIC20.54■□□□□ 0.88
HMGB1P09429 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
HMGB1P09429 PRORSD1P-202ENST00000563365 2154 ntBASIC20.54■□□□□ 0.88
HMGB1P09429 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
HMGB1P09429 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 SPDYE21P-201ENST00000413323 827 ntBASIC20.54■□□□□ 0.88
HMGB1P09429 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 HCG4P8-203ENST00000443049 980 ntBASIC20.54■□□□□ 0.88
HMGB1P09429 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
HMGB1P09429 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.54■□□□□ 0.88
HMGB1P09429 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.54■□□□□ 0.88
HMGB1P09429 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HMGB1P09429 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms