Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 AC010331.1-201ENST00000611423 582 ntBASIC16.74■□□□□ 0.27
SEMA3DO95025 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SEMA3DO95025 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.74■□□□□ 0.27
SEMA3DO95025 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.74■□□□□ 0.27
SEMA3DO95025 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SEMA3DO95025 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
SEMA3DO95025 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SEMA3DO95025 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 AL049757.1-201ENST00000616842 1596 ntBASIC16.73■□□□□ 0.27
SEMA3DO95025 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SEMA3DO95025 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.73■□□□□ 0.27
SEMA3DO95025 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.73■□□□□ 0.27
SEMA3DO95025 ATP5G2P1-201ENST00000433580 426 ntBASIC16.73■□□□□ 0.27
SEMA3DO95025 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.73■□□□□ 0.27
SEMA3DO95025 KRT17P6-201ENST00000453795 1220 ntBASIC16.73■□□□□ 0.27
SEMA3DO95025 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
SEMA3DO95025 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.73■□□□□ 0.27
SEMA3DO95025 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.73■□□□□ 0.27
SEMA3DO95025 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.73■□□□□ 0.27
SEMA3DO95025 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.73■□□□□ 0.27
SEMA3DO95025 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.73■□□□□ 0.27
SEMA3DO95025 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 NPAP1P7-201ENST00000613027 823 ntBASIC16.73■□□□□ 0.27
SEMA3DO95025 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.73■□□□□ 0.27
SEMA3DO95025 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.73■□□□□ 0.27
SEMA3DO95025 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.73■□□□□ 0.27
SEMA3DO95025 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SEMA3DO95025 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SEMA3DO95025 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.73■□□□□ 0.27
SEMA3DO95025 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SEMA3DO95025 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
SEMA3DO95025 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.72■□□□□ 0.27
SEMA3DO95025 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 ARMC10P1-201ENST00000313754 855 ntBASIC16.72■□□□□ 0.27
SEMA3DO95025 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
SEMA3DO95025 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.72■□□□□ 0.27
SEMA3DO95025 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.72■□□□□ 0.27
SEMA3DO95025 LINC00265-3P-201ENST00000447588 903 ntBASIC16.72■□□□□ 0.27
SEMA3DO95025 MIR3180-1-201ENST00000580374 94 ntBASIC16.72■□□□□ 0.27
SEMA3DO95025 MIR3180-3-201ENST00000584616 94 ntBASIC16.72■□□□□ 0.27
SEMA3DO95025 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.72■□□□□ 0.27
SEMA3DO95025 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 AC108860.2-201ENST00000562760 2183 ntBASIC16.72■□□□□ 0.27
SEMA3DO95025 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.72■□□□□ 0.27
SEMA3DO95025 AL353593.2-201ENST00000602529 1483 ntBASIC16.72■□□□□ 0.27
SEMA3DO95025 TP73-AS1-210ENST00000637775 1455 ntBASIC16.72■□□□□ 0.27
SEMA3DO95025 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.72■□□□□ 0.27
SEMA3DO95025 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.72■□□□□ 0.27
SEMA3DO95025 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
SEMA3DO95025 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SEMA3DO95025 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 266.6 ms