Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CROCCP2-202ENST00000412962 2773 ntBASIC16.43■□□□□ 0.22
LDB3O75112 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LDB3O75112 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 AC004817.3-201ENST00000602957 2129 ntBASIC16.42■□□□□ 0.22
LDB3O75112 AC148477.5-201ENST00000625164 1645 ntBASIC16.42■□□□□ 0.22
LDB3O75112 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.42■□□□□ 0.22
LDB3O75112 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
LDB3O75112 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 AC003669.1-201ENST00000334569 611 ntBASIC16.42■□□□□ 0.22
LDB3O75112 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.42■□□□□ 0.22
LDB3O75112 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.42■□□□□ 0.22
LDB3O75112 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
LDB3O75112 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.42■□□□□ 0.22
LDB3O75112 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.42■□□□□ 0.22
LDB3O75112 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.42■□□□□ 0.22
LDB3O75112 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.42■□□□□ 0.22
LDB3O75112 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.42■□□□□ 0.22
LDB3O75112 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.42■□□□□ 0.22
LDB3O75112 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
LDB3O75112 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.42■□□□□ 0.22
LDB3O75112 RN7SL510P-201ENST00000581311 263 ntBASIC16.42■□□□□ 0.22
LDB3O75112 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.42■□□□□ 0.22
LDB3O75112 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.42■□□□□ 0.22
LDB3O75112 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
LDB3O75112 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDB3O75112 AC009336.1-201ENST00000608941 1553 ntBASIC16.42■□□□□ 0.22
LDB3O75112 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.42■□□□□ 0.22
LDB3O75112 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.41■□□□□ 0.22
LDB3O75112 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LDB3O75112 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.41■□□□□ 0.22
LDB3O75112 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 AC046185.3-201ENST00000623228 1824 ntBASIC16.41■□□□□ 0.22
LDB3O75112 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 RBM17P3-201ENST00000417687 1192 ntBASIC16.41■□□□□ 0.22
LDB3O75112 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.41■□□□□ 0.22
LDB3O75112 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.41■□□□□ 0.22
LDB3O75112 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.41■□□□□ 0.22
LDB3O75112 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.41■□□□□ 0.22
LDB3O75112 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LDB3O75112 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LDB3O75112 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB3O75112 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.4■□□□□ 0.22
LDB3O75112 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LDB3O75112 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.4■□□□□ 0.22
LDB3O75112 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.4■□□□□ 0.22
LDB3O75112 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
LDB3O75112 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.4■□□□□ 0.22
LDB3O75112 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.4■□□□□ 0.22
LDB3O75112 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.4■□□□□ 0.22
LDB3O75112 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 AL355877.3-201ENST00000622820 899 ntBASIC16.4■□□□□ 0.22
LDB3O75112 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LDB3O75112 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LDB3O75112 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms