Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ABHD17AP3-201ENST00000503096 1137 ntBASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 AC129492.7-201ENST00000622992 756 ntBASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ARHGAP23P1-201ENST00000562773 1937 ntBASIC10.87□□□□□ -0.67
LINC00643Q86TS7 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC10.87□□□□□ -0.67
LINC00643Q86TS7 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 SRP19-202ENST00000445150 833 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC10.86□□□□□ -0.67
LINC00643Q86TS7 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
LINC00643Q86TS7 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 AC079781.5-202ENST00000641784 3743 ntBASIC10.85□□□□□ -0.67
LINC00643Q86TS7 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
LINC00643Q86TS7 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms