Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 DDX43P3-201ENST00000441064 443 ntBASIC12.03□□□□□ -0.48
CSMD3Q7Z407 AC116407.2-201ENST00000613639 860 ntBASIC12.03□□□□□ -0.48
CSMD3Q7Z407 AL138828.2-201ENST00000615812 383 ntBASIC12.03□□□□□ -0.48
CSMD3Q7Z407 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 AC079776.1-201ENST00000401540 1152 ntBASIC12.03□□□□□ -0.48
CSMD3Q7Z407 MIR1909-201ENST00000411312 80 ntBASIC12.03□□□□□ -0.48
CSMD3Q7Z407 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 STK19B-204ENST00000512515 211 ntBASIC12.03□□□□□ -0.48
CSMD3Q7Z407 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC12.03□□□□□ -0.48
CSMD3Q7Z407 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 RN7SL692P-201ENST00000464677 288 ntBASIC12.02□□□□□ -0.48
CSMD3Q7Z407 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
CSMD3Q7Z407 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 ACA64.2-201ENST00000459014 129 ntBASIC12.02□□□□□ -0.49
CSMD3Q7Z407 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 AC026120.1-201ENST00000611536 926 ntBASIC12.02□□□□□ -0.49
CSMD3Q7Z407 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 AL662799.1-202ENST00000614205 422 ntBASIC12.02□□□□□ -0.49
CSMD3Q7Z407 AC022144.1-201ENST00000602255 1580 ntBASIC12.02□□□□□ -0.49
CSMD3Q7Z407 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 HNRNPRP1-201ENST00000453465 1695 ntBASIC12.02□□□□□ -0.49
CSMD3Q7Z407 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CSMD3Q7Z407 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12.01□□□□□ -0.49
CSMD3Q7Z407 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.01□□□□□ -0.49
CSMD3Q7Z407 SPDYE7P-202ENST00000420373 878 ntBASIC12.01□□□□□ -0.49
CSMD3Q7Z407 ATP5G2P4-201ENST00000442175 420 ntBASIC12.01□□□□□ -0.49
CSMD3Q7Z407 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.01□□□□□ -0.49
CSMD3Q7Z407 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC12.01□□□□□ -0.49
CSMD3Q7Z407 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CSMD3Q7Z407 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.01□□□□□ -0.49
CSMD3Q7Z407 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CSMD3Q7Z407 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CSMD3Q7Z407 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms