Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.86■□□□□ 0.61
KRT39Q6A163 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.86■□□□□ 0.61
KRT39Q6A163 PRELID1P1-202ENST00000567272 903 ntBASIC18.86■□□□□ 0.61
KRT39Q6A163 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.86■□□□□ 0.61
KRT39Q6A163 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.86■□□□□ 0.61
KRT39Q6A163 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
KRT39Q6A163 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.86■□□□□ 0.61
KRT39Q6A163 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
KRT39Q6A163 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
KRT39Q6A163 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
KRT39Q6A163 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
KRT39Q6A163 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
KRT39Q6A163 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.85■□□□□ 0.61
KRT39Q6A163 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
KRT39Q6A163 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 TSPY19P-201ENST00000418461 509 ntBASIC18.85■□□□□ 0.61
KRT39Q6A163 TSPY18P-201ENST00000441642 509 ntBASIC18.85■□□□□ 0.61
KRT39Q6A163 AC132008.2-207ENST00000454517 770 ntBASIC18.85■□□□□ 0.61
KRT39Q6A163 KRT18P31-201ENST00000506277 1292 ntBASIC18.85■□□□□ 0.61
KRT39Q6A163 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.85■□□□□ 0.61
KRT39Q6A163 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.85■□□□□ 0.61
KRT39Q6A163 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.85■□□□□ 0.61
KRT39Q6A163 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.85■□□□□ 0.61
KRT39Q6A163 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
KRT39Q6A163 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
KRT39Q6A163 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.84■□□□□ 0.61
KRT39Q6A163 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.84■□□□□ 0.61
KRT39Q6A163 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.84■□□□□ 0.61
KRT39Q6A163 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 AC116353.5-201ENST00000638148 1699 ntBASIC18.84■□□□□ 0.61
KRT39Q6A163 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
KRT39Q6A163 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
KRT39Q6A163 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.83■□□□□ 0.61
KRT39Q6A163 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.83■□□□□ 0.61
KRT39Q6A163 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.83■□□□□ 0.61
KRT39Q6A163 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
KRT39Q6A163 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
KRT39Q6A163 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
KRT39Q6A163 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.83■□□□□ 0.6
KRT39Q6A163 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
KRT39Q6A163 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.83■□□□□ 0.6
KRT39Q6A163 KRT18P56-201ENST00000507275 550 ntBASIC18.83■□□□□ 0.6
KRT39Q6A163 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.83■□□□□ 0.6
KRT39Q6A163 AC091304.2-201ENST00000564639 760 ntBASIC18.83■□□□□ 0.6
KRT39Q6A163 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.83■□□□□ 0.6
KRT39Q6A163 AP001269.4-201ENST00000609611 512 ntBASIC18.83■□□□□ 0.6
KRT39Q6A163 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.83■□□□□ 0.6
KRT39Q6A163 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
KRT39Q6A163 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
KRT39Q6A163 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
KRT39Q6A163 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.83■□□□□ 0.6
KRT39Q6A163 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
KRT39Q6A163 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
KRT39Q6A163 AC020916.1-201ENST00000587762 1774 ntBASIC18.83■□□□□ 0.6
KRT39Q6A163 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.83■□□□□ 0.6
KRT39Q6A163 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
KRT39Q6A163 AP005117.1-201ENST00000584346 1413 ntBASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms