Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 STK19B-204ENST00000512515 211 ntBASIC17.24■□□□□ 0.35
SRP54P61011 STK25P1-201ENST00000585406 838 ntBASIC17.24■□□□□ 0.35
SRP54P61011 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SRP54P61011 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
SRP54P61011 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 PMS2P7-201ENST00000506558 1336 ntBASIC17.23■□□□□ 0.35
SRP54P61011 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.23■□□□□ 0.35
SRP54P61011 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.23■□□□□ 0.35
SRP54P61011 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
SRP54P61011 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.23■□□□□ 0.35
SRP54P61011 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.23■□□□□ 0.35
SRP54P61011 KRT18P27-201ENST00000427733 1299 ntBASIC17.23■□□□□ 0.35
SRP54P61011 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.23■□□□□ 0.35
SRP54P61011 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.23■□□□□ 0.35
SRP54P61011 AC002558.1-201ENST00000488906 803 ntBASIC17.23■□□□□ 0.35
SRP54P61011 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.23■□□□□ 0.35
SRP54P61011 UNC93B6-202ENST00000528242 690 ntBASIC17.23■□□□□ 0.35
SRP54P61011 AC034105.1-201ENST00000563488 319 ntBASIC17.23■□□□□ 0.35
SRP54P61011 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SRP54P61011 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.23■□□□□ 0.35
SRP54P61011 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
SRP54P61011 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SRP54P61011 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SRP54P61011 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SRP54P61011 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.22■□□□□ 0.35
SRP54P61011 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.22■□□□□ 0.35
SRP54P61011 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 AC027601.4-201ENST00000611259 610 ntBASIC17.22■□□□□ 0.35
SRP54P61011 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.22■□□□□ 0.35
SRP54P61011 AC005593.1-201ENST00000624894 515 ntBASIC17.22■□□□□ 0.35
SRP54P61011 PGM5P2-202ENST00000637225 1043 ntBASIC17.22■□□□□ 0.35
SRP54P61011 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.22■□□□□ 0.35
SRP54P61011 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SRP54P61011 BICD1-207ENST00000551848 1962 ntBASIC17.22■□□□□ 0.35
SRP54P61011 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SRP54P61011 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.21■□□□□ 0.35
SRP54P61011 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
SRP54P61011 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SRP54P61011 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms