Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.61■□□□□ 0.41
VIMP08670 AC026271.3-201ENST00000571884 352 ntBASIC17.61■□□□□ 0.41
VIMP08670 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.61■□□□□ 0.41
VIMP08670 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.61■□□□□ 0.41
VIMP08670 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 AC007950.2-201ENST00000615045 2347 ntBASIC17.61■□□□□ 0.41
VIMP08670 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 KRT16P1-201ENST00000399124 1418 ntBASIC17.61■□□□□ 0.41
VIMP08670 RNF216P1-203ENST00000404404 2427 ntBASIC17.61■□□□□ 0.41
VIMP08670 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VIMP08670 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VIMP08670 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.61■□□□□ 0.41
VIMP08670 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.6■□□□□ 0.41
VIMP08670 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
VIMP08670 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.6■□□□□ 0.41
VIMP08670 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.6■□□□□ 0.41
VIMP08670 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
VIMP08670 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 RARRES2P10-201ENST00000564312 460 ntBASIC17.6■□□□□ 0.41
VIMP08670 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 AC069544.1-201ENST00000609399 999 ntBASIC17.6■□□□□ 0.41
VIMP08670 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.6■□□□□ 0.41
VIMP08670 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 AC092068.3-201ENST00000587894 2016 ntBASIC17.6■□□□□ 0.41
VIMP08670 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VIMP08670 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
VIMP08670 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VIMP08670 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
VIMP08670 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VIMP08670 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.59■□□□□ 0.41
VIMP08670 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VIMP08670 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
VIMP08670 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.59■□□□□ 0.41
VIMP08670 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.59■□□□□ 0.41
VIMP08670 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VIMP08670 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.59■□□□□ 0.41
VIMP08670 KRT17P3-201ENST00000420566 1262 ntBASIC17.59■□□□□ 0.41
VIMP08670 AC011506.1-201ENST00000474329 610 ntBASIC17.59■□□□□ 0.41
VIMP08670 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.59■□□□□ 0.41
VIMP08670 UNC93B5-201ENST00000530315 699 ntBASIC17.59■□□□□ 0.41
VIMP08670 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.59■□□□□ 0.41
VIMP08670 AC008403.3-201ENST00000598924 454 ntBASIC17.59■□□□□ 0.41
VIMP08670 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.59■□□□□ 0.41
VIMP08670 CR392000.1-201ENST00000624770 1228 ntBASIC17.59■□□□□ 0.41
VIMP08670 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VIMP08670 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VIMP08670 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.58■□□□□ 0.41
VIMP08670 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
VIMP08670 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.58■□□□□ 0.41
VIMP08670 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.58■□□□□ 0.41
VIMP08670 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
VIMP08670 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms