Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 AL022326.1-202ENST00000641533 845 ntBASIC18.98■□□□□ 0.63
VPS52Q8N1B4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 NOC2LP2-201ENST00000407594 1944 ntBASIC18.98■□□□□ 0.63
VPS52Q8N1B4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 PMPCAP1-201ENST00000508114 1576 ntBASIC18.98■□□□□ 0.63
VPS52Q8N1B4 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
VPS52Q8N1B4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 AC096633.1-201ENST00000422446 749 ntBASIC18.97■□□□□ 0.63
VPS52Q8N1B4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 AC010327.4-202ENST00000591484 748 ntBASIC18.97■□□□□ 0.63
VPS52Q8N1B4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 AC010460.3-201ENST00000511359 1579 ntBASIC18.97■□□□□ 0.63
VPS52Q8N1B4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS52Q8N1B4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.96■□□□□ 0.63
VPS52Q8N1B4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS52Q8N1B4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
VPS52Q8N1B4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms