Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.63■□□□□ 0.73
TPM4P67936 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.63■□□□□ 0.73
TPM4P67936 KRT8P47-201ENST00000604727 1398 ntBASIC19.63■□□□□ 0.73
TPM4P67936 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.63■□□□□ 0.73
TPM4P67936 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.63■□□□□ 0.73
TPM4P67936 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
TPM4P67936 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.63■□□□□ 0.73
TPM4P67936 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
TPM4P67936 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 AC060834.1-201ENST00000443027 2032 ntBASIC19.63■□□□□ 0.73
TPM4P67936 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM4P67936 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TPM4P67936 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
TPM4P67936 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TPM4P67936 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.62■□□□□ 0.73
TPM4P67936 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.62■□□□□ 0.73
TPM4P67936 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.62■□□□□ 0.73
TPM4P67936 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TPM4P67936 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.62■□□□□ 0.73
TPM4P67936 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.62■□□□□ 0.73
TPM4P67936 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TPM4P67936 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
TPM4P67936 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 AC128688.1-201ENST00000487626 519 ntBASIC19.62■□□□□ 0.73
TPM4P67936 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.62■□□□□ 0.73
TPM4P67936 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TPM4P67936 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TPM4P67936 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.62■□□□□ 0.73
TPM4P67936 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM4P67936 PCDHA14-201ENST00000506751 2298 ntBASIC19.62■□□□□ 0.73
TPM4P67936 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TPM4P67936 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.61■□□□□ 0.73
TPM4P67936 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.61■□□□□ 0.73
TPM4P67936 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TPM4P67936 LINC01311-201ENST00000565162 1445 ntBASIC19.61■□□□□ 0.73
TPM4P67936 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.61■□□□□ 0.73
TPM4P67936 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TPM4P67936 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
TPM4P67936 AC068587.6-202ENST00000641839 5619 ntBASIC19.61■□□□□ 0.73
TPM4P67936 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.61■□□□□ 0.73
TPM4P67936 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TPM4P67936 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TPM4P67936 AL158047.1-201ENST00000445918 881 ntBASIC19.61■□□□□ 0.73
TPM4P67936 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.61■□□□□ 0.73
TPM4P67936 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 NEK4P2-201ENST00000580004 1012 ntBASIC19.61■□□□□ 0.73
TPM4P67936 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.61■□□□□ 0.73
TPM4P67936 AP000525.1-201ENST00000608286 694 ntBASIC19.61■□□□□ 0.73
TPM4P67936 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TPM4P67936 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.61■□□□□ 0.73
TPM4P67936 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM4P67936 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM4P67936 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM4P67936 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.6■□□□□ 0.73
TPM4P67936 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM4P67936 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms