Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
TRIM13O60858 HLA-F-220ENST00000434407 884 ntBASIC17.25■□□□□ 0.35
TRIM13O60858 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM13O60858 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM13O60858 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM13O60858 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TRIM13O60858 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM13O60858 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM13O60858 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM13O60858 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 PCDHB19P-201ENST00000570871 2371 ntBASIC17.24■□□□□ 0.35
TRIM13O60858 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 FLJ38576-201ENST00000623820 2459 ntBASIC17.24■□□□□ 0.35
TRIM13O60858 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRIM13O60858 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRIM13O60858 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 AC096633.1-201ENST00000422446 749 ntBASIC17.24■□□□□ 0.35
TRIM13O60858 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.24■□□□□ 0.35
TRIM13O60858 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.24■□□□□ 0.35
TRIM13O60858 MTCL1P1-201ENST00000446207 792 ntBASIC17.24■□□□□ 0.35
TRIM13O60858 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRIM13O60858 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 AC140113.3-201ENST00000605663 199 ntBASIC17.24■□□□□ 0.35
TRIM13O60858 AL023973.1-201ENST00000624619 620 ntBASIC17.24■□□□□ 0.35
TRIM13O60858 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 AC005915.1-201ENST00000624912 2018 ntBASIC17.24■□□□□ 0.35
TRIM13O60858 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM13O60858 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM13O60858 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM13O60858 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRIM13O60858 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM13O60858 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TRIM13O60858 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRIM13O60858 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.23■□□□□ 0.35
TRIM13O60858 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
TRIM13O60858 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TRIM13O60858 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.23■□□□□ 0.35
TRIM13O60858 AC002558.1-201ENST00000488906 803 ntBASIC17.23■□□□□ 0.35
TRIM13O60858 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.23■□□□□ 0.35
TRIM13O60858 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.23■□□□□ 0.35
TRIM13O60858 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TRIM13O60858 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM13O60858 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM13O60858 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms