Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 IGHV3-52-201ENST00000519770 353 ntBASIC22■■□□□ 1.11
NPHP1O15259 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC22■■□□□ 1.11
NPHP1O15259 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
NPHP1O15259 MIR3197-201ENST00000582241 73 ntBASIC22■■□□□ 1.11
NPHP1O15259 ORC5-208ENST00000626700 344 ntTSL 3 BASIC22■■□□□ 1.11
NPHP1O15259 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC22■■□□□ 1.11
NPHP1O15259 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC22■■□□□ 1.11
NPHP1O15259 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC22■■□□□ 1.11
NPHP1O15259 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
NPHP1O15259 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP1O15259 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP1O15259 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP1O15259 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC22■■□□□ 1.11
NPHP1O15259 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC21.99■■□□□ 1.11
NPHP1O15259 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC21.99■■□□□ 1.11
NPHP1O15259 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.99■■□□□ 1.11
NPHP1O15259 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC21.99■■□□□ 1.11
NPHP1O15259 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC21.99■■□□□ 1.11
NPHP1O15259 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.99■■□□□ 1.11
NPHP1O15259 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.99■■□□□ 1.11
NPHP1O15259 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC21.99■■□□□ 1.11
NPHP1O15259 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC21.99■■□□□ 1.11
NPHP1O15259 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
NPHP1O15259 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.99■■□□□ 1.11
NPHP1O15259 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.99■■□□□ 1.11
NPHP1O15259 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
NPHP1O15259 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
NPHP1O15259 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP1O15259 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.99■■□□□ 1.11
NPHP1O15259 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
NPHP1O15259 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC21.98■■□□□ 1.11
NPHP1O15259 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
NPHP1O15259 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
NPHP1O15259 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
NPHP1O15259 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
NPHP1O15259 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC21.98■■□□□ 1.11
NPHP1O15259 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP1O15259 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.98■■□□□ 1.11
NPHP1O15259 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP1O15259 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
NPHP1O15259 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC21.98■■□□□ 1.11
NPHP1O15259 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC21.98■■□□□ 1.11
NPHP1O15259 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP1O15259 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
NPHP1O15259 AC092364.2-202ENST00000597012 1073 ntBASIC21.98■■□□□ 1.11
NPHP1O15259 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP1O15259 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
NPHP1O15259 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
NPHP1O15259 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP1O15259 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 TNXA-203ENST00000507684 2038 ntBASIC21.97■■□□□ 1.11
NPHP1O15259 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP1O15259 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
NPHP1O15259 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP1O15259 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP1O15259 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP1O15259 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP1O15259 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
NPHP1O15259 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.97■■□□□ 1.11
NPHP1O15259 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP1O15259 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP1O15259 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC21.97■■□□□ 1.11
NPHP1O15259 PDPK2P-202ENST00000562415 1191 ntBASIC21.97■■□□□ 1.11
NPHP1O15259 AC011467.4-201ENST00000594891 528 ntBASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms