Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.18■■□□□ 1.62
PCDH9Q9HC56 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
PCDH9Q9HC56 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDH9Q9HC56 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC25.18■■□□□ 1.62
PCDH9Q9HC56 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PCDH9Q9HC56 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC25.18■■□□□ 1.62
PCDH9Q9HC56 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.18■■□□□ 1.62
PCDH9Q9HC56 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PCDH9Q9HC56 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDH9Q9HC56 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDH9Q9HC56 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PCDH9Q9HC56 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDH9Q9HC56 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC25.15■■□□□ 1.62
PCDH9Q9HC56 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDH9Q9HC56 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
PCDH9Q9HC56 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PCDH9Q9HC56 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.14■■□□□ 1.62
PCDH9Q9HC56 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PCDH9Q9HC56 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDH9Q9HC56 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
PCDH9Q9HC56 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDH9Q9HC56 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.13■■□□□ 1.61
PCDH9Q9HC56 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDH9Q9HC56 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
PCDH9Q9HC56 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
PCDH9Q9HC56 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDH9Q9HC56 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDH9Q9HC56 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDH9Q9HC56 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.11■■□□□ 1.61
PCDH9Q9HC56 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC25.11■■□□□ 1.61
PCDH9Q9HC56 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PCDH9Q9HC56 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC25.11■■□□□ 1.61
PCDH9Q9HC56 AC010501.1-201ENST00000606270 1962 ntBASIC25.11■■□□□ 1.61
PCDH9Q9HC56 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDH9Q9HC56 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PCDH9Q9HC56 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
PCDH9Q9HC56 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDH9Q9HC56 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.09■■□□□ 1.61
PCDH9Q9HC56 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDH9Q9HC56 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDH9Q9HC56 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PCDH9Q9HC56 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.08■■□□□ 1.61
PCDH9Q9HC56 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
PCDH9Q9HC56 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.08■■□□□ 1.61
PCDH9Q9HC56 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PCDH9Q9HC56 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
PCDH9Q9HC56 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.6
PCDH9Q9HC56 ERN1-208ENST00000606895 2068 ntBASIC25.08■■□□□ 1.6
PCDH9Q9HC56 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDH9Q9HC56 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDH9Q9HC56 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.07■■□□□ 1.6
PCDH9Q9HC56 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDH9Q9HC56 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC25.06■■□□□ 1.6
PCDH9Q9HC56 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDH9Q9HC56 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PCDH9Q9HC56 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.06■■□□□ 1.6
PCDH9Q9HC56 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PCDH9Q9HC56 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.06■■□□□ 1.6
PCDH9Q9HC56 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.06■■□□□ 1.6
PCDH9Q9HC56 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PCDH9Q9HC56 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDH9Q9HC56 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDH9Q9HC56 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDH9Q9HC56 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDH9Q9HC56 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDH9Q9HC56 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
PCDH9Q9HC56 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC25.03■■□□□ 1.6
PCDH9Q9HC56 AL359258.2-201ENST00000564063 1566 ntBASIC25.03■■□□□ 1.6
PCDH9Q9HC56 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.03■■□□□ 1.6
PCDH9Q9HC56 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
PCDH9Q9HC56 AC126177.7-201ENST00000547904 679 ntBASIC25.03■■□□□ 1.6
PCDH9Q9HC56 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.03■■□□□ 1.6
PCDH9Q9HC56 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDH9Q9HC56 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
PCDH9Q9HC56 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
PCDH9Q9HC56 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.02■■□□□ 1.6
PCDH9Q9HC56 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25.02■■□□□ 1.6
PCDH9Q9HC56 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms