Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
BRF2Q9HAW0 AC010501.1-201ENST00000606270 1962 ntBASIC23.34■■□□□ 1.33
BRF2Q9HAW0 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
BRF2Q9HAW0 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
BRF2Q9HAW0 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
BRF2Q9HAW0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
BRF2Q9HAW0 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
BRF2Q9HAW0 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
BRF2Q9HAW0 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.33■■□□□ 1.33
BRF2Q9HAW0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.33■■□□□ 1.33
BRF2Q9HAW0 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRF2Q9HAW0 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
BRF2Q9HAW0 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
BRF2Q9HAW0 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
BRF2Q9HAW0 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
BRF2Q9HAW0 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
BRF2Q9HAW0 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
BRF2Q9HAW0 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
BRF2Q9HAW0 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
BRF2Q9HAW0 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.3■■□□□ 1.32
BRF2Q9HAW0 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
BRF2Q9HAW0 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
BRF2Q9HAW0 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
BRF2Q9HAW0 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
BRF2Q9HAW0 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.29■■□□□ 1.32
BRF2Q9HAW0 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
BRF2Q9HAW0 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
BRF2Q9HAW0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
BRF2Q9HAW0 ERN1-208ENST00000606895 2068 ntBASIC23.29■■□□□ 1.32
BRF2Q9HAW0 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
BRF2Q9HAW0 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.28■■□□□ 1.32
BRF2Q9HAW0 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.27■■□□□ 1.32
BRF2Q9HAW0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
BRF2Q9HAW0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
BRF2Q9HAW0 AC060814.1-201ENST00000554326 538 ntBASIC23.25■■□□□ 1.31
BRF2Q9HAW0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.25■■□□□ 1.31
BRF2Q9HAW0 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.25■■□□□ 1.31
BRF2Q9HAW0 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
BRF2Q9HAW0 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.24■■□□□ 1.31
BRF2Q9HAW0 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
BRF2Q9HAW0 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
BRF2Q9HAW0 AL157400.5-201ENST00000507624 621 ntBASIC23.23■■□□□ 1.31
BRF2Q9HAW0 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
BRF2Q9HAW0 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
BRF2Q9HAW0 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
BRF2Q9HAW0 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
BRF2Q9HAW0 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BRF2Q9HAW0 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.22■■□□□ 1.31
BRF2Q9HAW0 AC020928.2-201ENST00000588717 2197 ntBASIC23.22■■□□□ 1.31
BRF2Q9HAW0 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BRF2Q9HAW0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BRF2Q9HAW0 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BRF2Q9HAW0 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BRF2Q9HAW0 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BRF2Q9HAW0 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BRF2Q9HAW0 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.21■■□□□ 1.31
BRF2Q9HAW0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BRF2Q9HAW0 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
BRF2Q9HAW0 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
BRF2Q9HAW0 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.2■■□□□ 1.3
BRF2Q9HAW0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 AC025884.2-201ENST00000553429 711 ntBASIC23.19■■□□□ 1.3
BRF2Q9HAW0 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
BRF2Q9HAW0 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms