Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
UBQLN3Q9H347 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
UBQLN3Q9H347 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC22.53■■□□□ 1.2
UBQLN3Q9H347 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.53■■□□□ 1.2
UBQLN3Q9H347 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
UBQLN3Q9H347 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
UBQLN3Q9H347 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
UBQLN3Q9H347 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
UBQLN3Q9H347 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
UBQLN3Q9H347 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.52■■□□□ 1.2
UBQLN3Q9H347 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.51■■□□□ 1.19
UBQLN3Q9H347 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
UBQLN3Q9H347 WHAMMP3-201ENST00000611636 1609 ntBASIC22.51■■□□□ 1.19
UBQLN3Q9H347 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
UBQLN3Q9H347 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
UBQLN3Q9H347 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
UBQLN3Q9H347 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.5■■□□□ 1.19
UBQLN3Q9H347 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
UBQLN3Q9H347 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
UBQLN3Q9H347 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.49■■□□□ 1.19
UBQLN3Q9H347 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
UBQLN3Q9H347 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.49■■□□□ 1.19
UBQLN3Q9H347 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UBQLN3Q9H347 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
UBQLN3Q9H347 AC145676.1-201ENST00000514988 2004 ntBASIC22.48■■□□□ 1.19
UBQLN3Q9H347 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.48■■□□□ 1.19
UBQLN3Q9H347 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
UBQLN3Q9H347 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
UBQLN3Q9H347 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UBQLN3Q9H347 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
UBQLN3Q9H347 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.47■■□□□ 1.19
UBQLN3Q9H347 AC135731.1-201ENST00000569415 2548 ntBASIC22.47■■□□□ 1.19
UBQLN3Q9H347 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC22.47■■□□□ 1.19
UBQLN3Q9H347 AC025884.2-201ENST00000553429 711 ntBASIC22.47■■□□□ 1.19
UBQLN3Q9H347 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
UBQLN3Q9H347 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.47■■□□□ 1.19
UBQLN3Q9H347 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
UBQLN3Q9H347 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
UBQLN3Q9H347 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.46■■□□□ 1.19
UBQLN3Q9H347 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.46■■□□□ 1.19
UBQLN3Q9H347 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
UBQLN3Q9H347 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
UBQLN3Q9H347 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
UBQLN3Q9H347 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.45■■□□□ 1.19
UBQLN3Q9H347 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
UBQLN3Q9H347 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
UBQLN3Q9H347 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.45■■□□□ 1.18
UBQLN3Q9H347 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
UBQLN3Q9H347 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
UBQLN3Q9H347 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.45■■□□□ 1.18
UBQLN3Q9H347 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
UBQLN3Q9H347 AP004609.3-201ENST00000610705 1884 ntBASIC22.45■■□□□ 1.18
UBQLN3Q9H347 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.44■■□□□ 1.18
UBQLN3Q9H347 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
UBQLN3Q9H347 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.44■■□□□ 1.18
UBQLN3Q9H347 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.44■■□□□ 1.18
UBQLN3Q9H347 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.44■■□□□ 1.18
UBQLN3Q9H347 NTF6A-201ENST00000591175 560 ntBASIC22.44■■□□□ 1.18
UBQLN3Q9H347 AC007029.1-201ENST00000604183 313 ntBASIC22.44■■□□□ 1.18
UBQLN3Q9H347 SMPD5-203ENST00000639008 1464 ntBASIC22.44■■□□□ 1.18
UBQLN3Q9H347 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.44■■□□□ 1.18
UBQLN3Q9H347 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.43■■□□□ 1.18
UBQLN3Q9H347 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.43■■□□□ 1.18
UBQLN3Q9H347 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
UBQLN3Q9H347 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
UBQLN3Q9H347 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
UBQLN3Q9H347 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
UBQLN3Q9H347 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
UBQLN3Q9H347 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.42■■□□□ 1.18
UBQLN3Q9H347 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
UBQLN3Q9H347 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
UBQLN3Q9H347 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.41■■□□□ 1.18
UBQLN3Q9H347 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
UBQLN3Q9H347 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
UBQLN3Q9H347 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
UBQLN3Q9H347 U85056.1-201ENST00000616429 682 ntBASIC22.4■■□□□ 1.18
UBQLN3Q9H347 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
UBQLN3Q9H347 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
UBQLN3Q9H347 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
UBQLN3Q9H347 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
UBQLN3Q9H347 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
UBQLN3Q9H347 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.39■■□□□ 1.17
UBQLN3Q9H347 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.39■■□□□ 1.17
UBQLN3Q9H347 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
UBQLN3Q9H347 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
UBQLN3Q9H347 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
UBQLN3Q9H347 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
UBQLN3Q9H347 AC092803.2-201ENST00000564287 1899 ntBASIC22.38■■□□□ 1.17
UBQLN3Q9H347 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
UBQLN3Q9H347 AL359504.2-201ENST00000605506 1601 ntBASIC22.38■■□□□ 1.17
UBQLN3Q9H347 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
UBQLN3Q9H347 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
UBQLN3Q9H347 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
UBQLN3Q9H347 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
UBQLN3Q9H347 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.37■■□□□ 1.17
UBQLN3Q9H347 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.37■■□□□ 1.17
UBQLN3Q9H347 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
UBQLN3Q9H347 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.37■■□□□ 1.17
UBQLN3Q9H347 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
UBQLN3Q9H347 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms