Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 LGR4-203ENST00000480977 492 ntTSL 2 BASIC24.36■■□□□ 1.49
CFAP54Q96N23 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC24.36■■□□□ 1.49
CFAP54Q96N23 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
CFAP54Q96N23 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.36■■□□□ 1.49
CFAP54Q96N23 BX664725.1-201ENST00000438252 379 ntBASIC24.36■■□□□ 1.49
CFAP54Q96N23 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CFAP54Q96N23 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.34■■□□□ 1.49
CFAP54Q96N23 SUDS3P1-201ENST00000505831 966 ntBASIC24.34■■□□□ 1.49
CFAP54Q96N23 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.34■■□□□ 1.49
CFAP54Q96N23 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.33■■□□□ 1.49
CFAP54Q96N23 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.33■■□□□ 1.49
CFAP54Q96N23 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CFAP54Q96N23 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.33■■□□□ 1.49
CFAP54Q96N23 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.33■■□□□ 1.48
CFAP54Q96N23 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
CFAP54Q96N23 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
CFAP54Q96N23 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.32■■□□□ 1.48
CFAP54Q96N23 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CFAP54Q96N23 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CFAP54Q96N23 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.31■■□□□ 1.48
CFAP54Q96N23 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CFAP54Q96N23 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.31■■□□□ 1.48
CFAP54Q96N23 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CFAP54Q96N23 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC24.31■■□□□ 1.48
CFAP54Q96N23 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CFAP54Q96N23 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.3■■□□□ 1.48
CFAP54Q96N23 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CFAP54Q96N23 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CFAP54Q96N23 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.29■■□□□ 1.48
CFAP54Q96N23 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.29■■□□□ 1.48
CFAP54Q96N23 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
CFAP54Q96N23 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
CFAP54Q96N23 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CFAP54Q96N23 AL162430.1-201ENST00000480705 870 ntBASIC24.29■■□□□ 1.48
CFAP54Q96N23 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.29■■□□□ 1.48
CFAP54Q96N23 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CFAP54Q96N23 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.28■■□□□ 1.48
CFAP54Q96N23 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.28■■□□□ 1.48
CFAP54Q96N23 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CFAP54Q96N23 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.28■■□□□ 1.48
CFAP54Q96N23 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.28■■□□□ 1.48
CFAP54Q96N23 AC106739.1-201ENST00000617035 715 ntBASIC24.27■■□□□ 1.48
CFAP54Q96N23 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
CFAP54Q96N23 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.27■■□□□ 1.48
CFAP54Q96N23 TSPY9P-201ENST00000440215 945 ntBASIC24.27■■□□□ 1.48
CFAP54Q96N23 TSPY11P-201ENST00000442607 1045 ntBASIC24.27■■□□□ 1.48
CFAP54Q96N23 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CFAP54Q96N23 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.26■■□□□ 1.47
CFAP54Q96N23 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CFAP54Q96N23 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.26■■□□□ 1.47
CFAP54Q96N23 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.26■■□□□ 1.47
CFAP54Q96N23 MIR3960-201ENST00000583311 91 ntBASIC24.26■■□□□ 1.47
CFAP54Q96N23 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.26■■□□□ 1.47
CFAP54Q96N23 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CFAP54Q96N23 ESRRAP2-201ENST00000418437 1549 ntBASIC24.26■■□□□ 1.47
CFAP54Q96N23 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CFAP54Q96N23 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CFAP54Q96N23 AL117332.1-201ENST00000622628 974 ntBASIC24.26■■□□□ 1.47
CFAP54Q96N23 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
CFAP54Q96N23 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
CFAP54Q96N23 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24.25■■□□□ 1.47
CFAP54Q96N23 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CFAP54Q96N23 DENND3-207ENST00000518347 850 ntTSL 2 BASIC24.25■■□□□ 1.47
CFAP54Q96N23 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CFAP54Q96N23 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.24■■□□□ 1.47
CFAP54Q96N23 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
CFAP54Q96N23 MIR3621-201ENST00000580529 85 ntBASIC24.24■■□□□ 1.47
CFAP54Q96N23 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC24.24■■□□□ 1.47
CFAP54Q96N23 AC087623.3-201ENST00000607047 1098 ntBASIC24.24■■□□□ 1.47
CFAP54Q96N23 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.24■■□□□ 1.47
CFAP54Q96N23 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CFAP54Q96N23 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.24■■□□□ 1.47
CFAP54Q96N23 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.23■■□□□ 1.47
CFAP54Q96N23 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.23■■□□□ 1.47
CFAP54Q96N23 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CFAP54Q96N23 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
CFAP54Q96N23 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CFAP54Q96N23 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC24.22■■□□□ 1.47
CFAP54Q96N23 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CFAP54Q96N23 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.22■■□□□ 1.47
CFAP54Q96N23 MIR6821-201ENST00000617625 74 ntBASIC24.22■■□□□ 1.47
CFAP54Q96N23 AC142381.2-201ENST00000566120 298 ntBASIC24.22■■□□□ 1.47
CFAP54Q96N23 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24.22■■□□□ 1.47
CFAP54Q96N23 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CFAP54Q96N23 AC087393.1-201ENST00000582896 145 ntBASIC24.21■■□□□ 1.47
CFAP54Q96N23 AL031432.3-201ENST00000607698 485 ntBASIC24.21■■□□□ 1.47
CFAP54Q96N23 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CFAP54Q96N23 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC24.21■■□□□ 1.47
CFAP54Q96N23 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.21■■□□□ 1.47
CFAP54Q96N23 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CFAP54Q96N23 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC24.2■■□□□ 1.46
CFAP54Q96N23 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CFAP54Q96N23 AC022616.5-201ENST00000518796 181 ntBASIC24.2■■□□□ 1.46
CFAP54Q96N23 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CFAP54Q96N23 AC097381.1-201ENST00000429019 1296 ntBASIC24.2■■□□□ 1.46
CFAP54Q96N23 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC24.2■■□□□ 1.46
CFAP54Q96N23 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CFAP54Q96N23 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC24.2■■□□□ 1.46
CFAP54Q96N23 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CFAP54Q96N23 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms