Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC32.6■■■□□ 2.81
USHBP1Q8N6Y0 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC32.6■■■□□ 2.81
USHBP1Q8N6Y0 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
USHBP1Q8N6Y0 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC32.6■■■□□ 2.81
USHBP1Q8N6Y0 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC32.59■■■□□ 2.81
USHBP1Q8N6Y0 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC32.59■■■□□ 2.81
USHBP1Q8N6Y0 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC32.59■■■□□ 2.81
USHBP1Q8N6Y0 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC32.59■■■□□ 2.81
USHBP1Q8N6Y0 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC32.59■■■□□ 2.81
USHBP1Q8N6Y0 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC32.59■■■□□ 2.81
USHBP1Q8N6Y0 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC32.59■■■□□ 2.81
USHBP1Q8N6Y0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC32.58■■■□□ 2.81
USHBP1Q8N6Y0 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
USHBP1Q8N6Y0 IDNK-201ENST00000376417 511 ntTSL 5 BASIC32.58■■■□□ 2.81
USHBP1Q8N6Y0 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
USHBP1Q8N6Y0 MIR4508-201ENST00000584178 70 ntBASIC32.58■■■□□ 2.81
USHBP1Q8N6Y0 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC32.58■■■□□ 2.81
USHBP1Q8N6Y0 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC32.58■■■□□ 2.81
USHBP1Q8N6Y0 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC32.57■■■□□ 2.8
USHBP1Q8N6Y0 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
USHBP1Q8N6Y0 AC103724.3-201ENST00000564481 992 ntBASIC32.57■■■□□ 2.8
USHBP1Q8N6Y0 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC32.56■■■□□ 2.8
USHBP1Q8N6Y0 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC32.56■■■□□ 2.8
USHBP1Q8N6Y0 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
USHBP1Q8N6Y0 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
USHBP1Q8N6Y0 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
USHBP1Q8N6Y0 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
USHBP1Q8N6Y0 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
USHBP1Q8N6Y0 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC32.55■■■□□ 2.8
USHBP1Q8N6Y0 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
USHBP1Q8N6Y0 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
USHBP1Q8N6Y0 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
USHBP1Q8N6Y0 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC32.53■■■□□ 2.8
USHBP1Q8N6Y0 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC32.53■■■□□ 2.8
USHBP1Q8N6Y0 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
USHBP1Q8N6Y0 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
USHBP1Q8N6Y0 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
USHBP1Q8N6Y0 AL449106.1-201ENST00000608517 1980 ntBASIC32.52■■■□□ 2.8
USHBP1Q8N6Y0 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC32.52■■■□□ 2.8
USHBP1Q8N6Y0 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
USHBP1Q8N6Y0 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
USHBP1Q8N6Y0 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
USHBP1Q8N6Y0 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC32.5■■■□□ 2.79
USHBP1Q8N6Y0 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC32.49■■■□□ 2.79
USHBP1Q8N6Y0 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC32.49■■■□□ 2.79
USHBP1Q8N6Y0 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC32.49■■■□□ 2.79
USHBP1Q8N6Y0 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC32.49■■■□□ 2.79
USHBP1Q8N6Y0 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 HES6-204ENST00000409182 863 ntTSL 2 BASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 OR2A1-AS1-204ENST00000470435 602 ntBASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 PRTG-204ENST00000561292 833 ntTSL 3 BASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
USHBP1Q8N6Y0 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
USHBP1Q8N6Y0 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
USHBP1Q8N6Y0 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC32.47■■■□□ 2.79
USHBP1Q8N6Y0 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC32.47■■■□□ 2.79
USHBP1Q8N6Y0 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC32.47■■■□□ 2.79
USHBP1Q8N6Y0 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
USHBP1Q8N6Y0 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
USHBP1Q8N6Y0 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC32.46■■■□□ 2.79
USHBP1Q8N6Y0 AL031848.2-201ENST00000607670 837 ntBASIC32.46■■■□□ 2.79
USHBP1Q8N6Y0 GUSBP5-201ENST00000418136 578 ntBASIC32.45■■■□□ 2.79
USHBP1Q8N6Y0 AC087393.1-201ENST00000582896 145 ntBASIC32.45■■■□□ 2.79
USHBP1Q8N6Y0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC32.45■■■□□ 2.78
USHBP1Q8N6Y0 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 AL592295.1-201ENST00000400984 884 ntBASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 MTX2-204ENST00000443241 799 ntTSL 3 BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC32.44■■■□□ 2.78
USHBP1Q8N6Y0 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
USHBP1Q8N6Y0 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
USHBP1Q8N6Y0 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
USHBP1Q8N6Y0 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC32.42■■■□□ 2.78
USHBP1Q8N6Y0 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
USHBP1Q8N6Y0 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
USHBP1Q8N6Y0 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
USHBP1Q8N6Y0 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC32.41■■■□□ 2.78
USHBP1Q8N6Y0 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
USHBP1Q8N6Y0 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC32.4■■■□□ 2.78
USHBP1Q8N6Y0 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
USHBP1Q8N6Y0 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC32.4■■■□□ 2.78
USHBP1Q8N6Y0 RPS2P7-201ENST00000447334 885 ntBASIC32.4■■■□□ 2.78
USHBP1Q8N6Y0 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC32.39■■■□□ 2.78
USHBP1Q8N6Y0 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC32.39■■■□□ 2.78
USHBP1Q8N6Y0 AC131212.1-201ENST00000613771 668 ntBASIC32.39■■■□□ 2.78
USHBP1Q8N6Y0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC32.39■■■□□ 2.78
USHBP1Q8N6Y0 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC32.39■■■□□ 2.78
USHBP1Q8N6Y0 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC32.39■■■□□ 2.78
USHBP1Q8N6Y0 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
USHBP1Q8N6Y0 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms