Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L13-201ENST00000554103 1267 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L15-201ENST00000611059 1267 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L23-201ENST00000615195 1269 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L24-201ENST00000617576 1269 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L22-201ENST00000618238 1269 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L20-201ENST00000619712 1269 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L21-201ENST00000622058 1269 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L10-201ENST00000622460 1267 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 DUX4L25-201ENST00000624915 1269 ntBASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DEPDC4Q8N2C3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DEPDC4Q8N2C3 LINC00273-201ENST00000539813 1452 ntBASIC22.43■■□□□ 1.18
DEPDC4Q8N2C3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
DEPDC4Q8N2C3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DEPDC4Q8N2C3 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.42■■□□□ 1.18
DEPDC4Q8N2C3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DEPDC4Q8N2C3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DEPDC4Q8N2C3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
DEPDC4Q8N2C3 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DEPDC4Q8N2C3 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
DEPDC4Q8N2C3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
DEPDC4Q8N2C3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.41■■□□□ 1.18
DEPDC4Q8N2C3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DEPDC4Q8N2C3 CR559946.2-201ENST00000623684 991 ntBASIC22.41■■□□□ 1.18
DEPDC4Q8N2C3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
DEPDC4Q8N2C3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 ERN1-208ENST00000606895 2068 ntBASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
DEPDC4Q8N2C3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC22.39■■□□□ 1.17
DEPDC4Q8N2C3 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
DEPDC4Q8N2C3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DEPDC4Q8N2C3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DEPDC4Q8N2C3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.38■■□□□ 1.17
DEPDC4Q8N2C3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
DEPDC4Q8N2C3 MIR4449-201ENST00000578365 66 ntBASIC22.37■■□□□ 1.17
DEPDC4Q8N2C3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
DEPDC4Q8N2C3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
DEPDC4Q8N2C3 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.36■■□□□ 1.17
DEPDC4Q8N2C3 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
DEPDC4Q8N2C3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
DEPDC4Q8N2C3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
DEPDC4Q8N2C3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.34■■□□□ 1.17
DEPDC4Q8N2C3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
DEPDC4Q8N2C3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
DEPDC4Q8N2C3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DEPDC4Q8N2C3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
DEPDC4Q8N2C3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.33■■□□□ 1.17
DEPDC4Q8N2C3 AC142381.3-201ENST00000568208 1670 ntBASIC22.33■■□□□ 1.17
DEPDC4Q8N2C3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
DEPDC4Q8N2C3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
DEPDC4Q8N2C3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
DEPDC4Q8N2C3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.33■■□□□ 1.16
DEPDC4Q8N2C3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.33■■□□□ 1.16
DEPDC4Q8N2C3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.33■■□□□ 1.16
DEPDC4Q8N2C3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
DEPDC4Q8N2C3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.32■■□□□ 1.16
DEPDC4Q8N2C3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
DEPDC4Q8N2C3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
DEPDC4Q8N2C3 AC010501.1-201ENST00000606270 1962 ntBASIC22.31■■□□□ 1.16
DEPDC4Q8N2C3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DEPDC4Q8N2C3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.31■■□□□ 1.16
DEPDC4Q8N2C3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.31■■□□□ 1.16
DEPDC4Q8N2C3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DEPDC4Q8N2C3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DEPDC4Q8N2C3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DEPDC4Q8N2C3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DEPDC4Q8N2C3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC22.3■■□□□ 1.16
DEPDC4Q8N2C3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.3■■□□□ 1.16
DEPDC4Q8N2C3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
DEPDC4Q8N2C3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DEPDC4Q8N2C3 WHAMMP3-201ENST00000611636 1609 ntBASIC22.29■■□□□ 1.16
DEPDC4Q8N2C3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
DEPDC4Q8N2C3 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
DEPDC4Q8N2C3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
DEPDC4Q8N2C3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.29■■□□□ 1.16
DEPDC4Q8N2C3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DEPDC4Q8N2C3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms