Protein–RNA interactions for Protein: Q7RTT3

SSX9, Protein SSX9, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX9Q7RTT3 LINC01971-201ENST00000617888 1048 ntBASIC19.87■□□□□ 0.77
SSX9Q7RTT3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX9Q7RTT3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX9Q7RTT3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX9Q7RTT3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX9Q7RTT3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 DUSP8P4-201ENST00000399538 1761 ntBASIC19.86■□□□□ 0.77
SSX9Q7RTT3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 AC020928.2-201ENST00000588717 2197 ntBASIC19.86■□□□□ 0.77
SSX9Q7RTT3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX9Q7RTT3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SSX9Q7RTT3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX9Q7RTT3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SSX9Q7RTT3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX9Q7RTT3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX9Q7RTT3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SSX9Q7RTT3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX9Q7RTT3 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SSX9Q7RTT3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX9Q7RTT3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX9Q7RTT3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX9Q7RTT3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX9Q7RTT3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX9Q7RTT3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX9Q7RTT3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.83■□□□□ 0.77
SSX9Q7RTT3 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSX9Q7RTT3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSX9Q7RTT3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSX9Q7RTT3 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.83■□□□□ 0.76
SSX9Q7RTT3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSX9Q7RTT3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
SSX9Q7RTT3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX9Q7RTT3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX9Q7RTT3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC19.82■□□□□ 0.76
SSX9Q7RTT3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX9Q7RTT3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX9Q7RTT3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX9Q7RTT3 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SSX9Q7RTT3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX9Q7RTT3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX9Q7RTT3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L13-201ENST00000554103 1267 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L15-201ENST00000611059 1267 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L23-201ENST00000615195 1269 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L24-201ENST00000617576 1269 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L22-201ENST00000618238 1269 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L20-201ENST00000619712 1269 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L21-201ENST00000622058 1269 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L10-201ENST00000622460 1267 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 DUX4L25-201ENST00000624915 1269 ntBASIC19.81■□□□□ 0.76
SSX9Q7RTT3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX9Q7RTT3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
SSX9Q7RTT3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SSX9Q7RTT3 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SSX9Q7RTT3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.78■□□□□ 0.76
SSX9Q7RTT3 DUX4L11-201ENST00000611504 1267 ntBASIC19.78■□□□□ 0.76
SSX9Q7RTT3 DUX4L12-201ENST00000614593 1267 ntBASIC19.78■□□□□ 0.76
SSX9Q7RTT3 DUX4L14-201ENST00000621227 1267 ntBASIC19.78■□□□□ 0.76
SSX9Q7RTT3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.78■□□□□ 0.76
SSX9Q7RTT3 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.78■□□□□ 0.76
SSX9Q7RTT3 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SSX9Q7RTT3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms