Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CDX1P47902 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDX1P47902 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDX1P47902 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.62■□□□□ 0.73
CDX1P47902 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CDX1P47902 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDX1P47902 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.61■□□□□ 0.73
CDX1P47902 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDX1P47902 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX1P47902 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX1P47902 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.61■□□□□ 0.73
CDX1P47902 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.61■□□□□ 0.73
CDX1P47902 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX1P47902 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX1P47902 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX1P47902 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CDX1P47902 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CDX1P47902 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.6■□□□□ 0.73
CDX1P47902 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC19.6■□□□□ 0.73
CDX1P47902 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
CDX1P47902 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CDX1P47902 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CDX1P47902 AC012676.1-201ENST00000574705 1949 ntBASIC19.6■□□□□ 0.73
CDX1P47902 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDX1P47902 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDX1P47902 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.6■□□□□ 0.73
CDX1P47902 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.6■□□□□ 0.73
CDX1P47902 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CDX1P47902 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX1P47902 MIR219A2-201ENST00000608502 1504 ntBASIC19.59■□□□□ 0.73
CDX1P47902 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX1P47902 AC091060.1-201ENST00000623524 1766 ntBASIC19.59■□□□□ 0.73
CDX1P47902 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
CDX1P47902 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CDX1P47902 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CDX1P47902 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
CDX1P47902 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDX1P47902 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC19.57■□□□□ 0.72
CDX1P47902 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDX1P47902 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.57■□□□□ 0.72
CDX1P47902 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CDX1P47902 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CDX1P47902 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDX1P47902 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.57■□□□□ 0.72
CDX1P47902 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.57■□□□□ 0.72
CDX1P47902 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.57■□□□□ 0.72
CDX1P47902 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.56■□□□□ 0.72
CDX1P47902 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 GPX1-201ENST00000419349 1106 ntBASIC19.56■□□□□ 0.72
CDX1P47902 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CDX1P47902 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 CLDN5-201ENST00000403084 2357 ntBASIC19.56■□□□□ 0.72
CDX1P47902 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX1P47902 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDX1P47902 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CDX1P47902 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
CDX1P47902 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDX1P47902 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.55■□□□□ 0.72
CDX1P47902 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDX1P47902 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.55■□□□□ 0.72
CDX1P47902 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDX1P47902 BX255925.1-201ENST00000566954 1854 ntBASIC19.55■□□□□ 0.72
CDX1P47902 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CDX1P47902 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.55■□□□□ 0.72
CDX1P47902 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CDX1P47902 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CDX1P47902 AC022413.1-201ENST00000624602 984 ntBASIC19.54■□□□□ 0.72
CDX1P47902 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.54■□□□□ 0.72
CDX1P47902 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDX1P47902 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.54■□□□□ 0.72
CDX1P47902 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDX1P47902 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDX1P47902 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDX1P47902 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDX1P47902 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDX1P47902 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDX1P47902 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.53■□□□□ 0.72
CDX1P47902 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC19.53■□□□□ 0.72
CDX1P47902 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CDX1P47902 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CDX1P47902 AP002414.2-202ENST00000590929 1450 ntBASIC19.53■□□□□ 0.72
CDX1P47902 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDX1P47902 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.52■□□□□ 0.72
CDX1P47902 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX1P47902 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX1P47902 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
CDX1P47902 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX1P47902 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX1P47902 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX1P47902 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX1P47902 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.51■□□□□ 0.71
CDX1P47902 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.51■□□□□ 0.71
CDX1P47902 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX1P47902 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms