Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
HMGB1P09429 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
HMGB1P09429 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
HMGB1P09429 AL157400.5-201ENST00000507624 621 ntBASIC28.85■■■□□ 2.21
HMGB1P09429 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
HMGB1P09429 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
HMGB1P09429 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
HMGB1P09429 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
HMGB1P09429 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
HMGB1P09429 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
HMGB1P09429 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC28.83■■■□□ 2.21
HMGB1P09429 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
HMGB1P09429 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
HMGB1P09429 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
HMGB1P09429 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
HMGB1P09429 AC092296.2-201ENST00000589470 999 ntBASIC28.82■■■□□ 2.2
HMGB1P09429 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
HMGB1P09429 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
HMGB1P09429 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
HMGB1P09429 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC28.81■■■□□ 2.2
HMGB1P09429 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
HMGB1P09429 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
HMGB1P09429 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
HMGB1P09429 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.81■■■□□ 2.2
HMGB1P09429 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
HMGB1P09429 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC28.8■■■□□ 2.2
HMGB1P09429 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC28.8■■■□□ 2.2
HMGB1P09429 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
HMGB1P09429 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
HMGB1P09429 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.8■■■□□ 2.2
HMGB1P09429 AC022413.1-201ENST00000624602 984 ntBASIC28.8■■■□□ 2.2
HMGB1P09429 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
HMGB1P09429 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
HMGB1P09429 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
HMGB1P09429 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC28.78■■■□□ 2.2
HMGB1P09429 AC025884.2-201ENST00000553429 711 ntBASIC28.78■■■□□ 2.2
HMGB1P09429 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC28.78■■■□□ 2.2
HMGB1P09429 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
HMGB1P09429 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.77■■■□□ 2.2
HMGB1P09429 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
HMGB1P09429 PFN2-211ENST00000489155 636 ntTSL 4 BASIC28.77■■■□□ 2.2
HMGB1P09429 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.77■■■□□ 2.2
HMGB1P09429 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
HMGB1P09429 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC28.77■■■□□ 2.2
HMGB1P09429 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.2
HMGB1P09429 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
HMGB1P09429 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC28.76■■■□□ 2.19
HMGB1P09429 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
HMGB1P09429 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
HMGB1P09429 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC28.76■■■□□ 2.19
HMGB1P09429 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
HMGB1P09429 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
HMGB1P09429 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.75■■■□□ 2.19
HMGB1P09429 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
HMGB1P09429 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
HMGB1P09429 ECEL1P2-201ENST00000461596 1295 ntBASIC28.75■■■□□ 2.19
HMGB1P09429 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.75■■■□□ 2.19
HMGB1P09429 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.75■■■□□ 2.19
HMGB1P09429 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.75■■■□□ 2.19
HMGB1P09429 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
HMGB1P09429 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC28.75■■■□□ 2.19
HMGB1P09429 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC28.75■■■□□ 2.19
HMGB1P09429 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.74■■■□□ 2.19
HMGB1P09429 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC28.74■■■□□ 2.19
HMGB1P09429 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
HMGB1P09429 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC28.74■■■□□ 2.19
HMGB1P09429 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC28.74■■■□□ 2.19
HMGB1P09429 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
HMGB1P09429 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
HMGB1P09429 AC010501.1-201ENST00000606270 1962 ntBASIC28.73■■■□□ 2.19
HMGB1P09429 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
HMGB1P09429 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.72■■■□□ 2.19
HMGB1P09429 SMPD5-203ENST00000639008 1464 ntBASIC28.72■■■□□ 2.19
HMGB1P09429 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC28.72■■■□□ 2.19
HMGB1P09429 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
HMGB1P09429 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
HMGB1P09429 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
HMGB1P09429 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
HMGB1P09429 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC28.72■■■□□ 2.19
HMGB1P09429 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
HMGB1P09429 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
HMGB1P09429 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
HMGB1P09429 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
HMGB1P09429 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
HMGB1P09429 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.7■■■□□ 2.19
HMGB1P09429 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.7■■■□□ 2.18
HMGB1P09429 MIR3960-201ENST00000583311 91 ntBASIC28.7■■■□□ 2.18
HMGB1P09429 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC28.7■■■□□ 2.18
HMGB1P09429 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
HMGB1P09429 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
HMGB1P09429 ERN1-208ENST00000606895 2068 ntBASIC28.7■■■□□ 2.18
HMGB1P09429 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC28.69■■■□□ 2.18
HMGB1P09429 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
HMGB1P09429 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC28.68■■■□□ 2.18
HMGB1P09429 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
HMGB1P09429 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC28.67■■■□□ 2.18
HMGB1P09429 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
HMGB1P09429 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
HMGB1P09429 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
HMGB1P09429 GPX1-201ENST00000419349 1106 ntBASIC28.66■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms