Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TRAV17A0A0B4J275 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAV17A0A0B4J275 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAV17A0A0B4J275 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAV17A0A0B4J275 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
TRAV17A0A0B4J275 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAV17A0A0B4J275 AC009299.2-201ENST00000482477 511 ntBASIC22.27■■□□□ 1.16
TRAV17A0A0B4J275 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAV17A0A0B4J275 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRAV17A0A0B4J275 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
TRAV17A0A0B4J275 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAV17A0A0B4J275 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRAV17A0A0B4J275 DRD5P2-201ENST00000421395 2012 ntBASIC22.26■■□□□ 1.15
TRAV17A0A0B4J275 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
TRAV17A0A0B4J275 AC019171.1-201ENST00000601251 1056 ntBASIC22.25■■□□□ 1.15
TRAV17A0A0B4J275 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRAV17A0A0B4J275 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
TRAV17A0A0B4J275 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
TRAV17A0A0B4J275 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TRAV17A0A0B4J275 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRAV17A0A0B4J275 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
TRAV17A0A0B4J275 AC087393.1-201ENST00000582896 145 ntBASIC22.24■■□□□ 1.15
TRAV17A0A0B4J275 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.24■■□□□ 1.15
TRAV17A0A0B4J275 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRAV17A0A0B4J275 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV17A0A0B4J275 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
TRAV17A0A0B4J275 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV17A0A0B4J275 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV17A0A0B4J275 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV17A0A0B4J275 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
TRAV17A0A0B4J275 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
TRAV17A0A0B4J275 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22.22■■□□□ 1.15
TRAV17A0A0B4J275 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV17A0A0B4J275 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV17A0A0B4J275 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV17A0A0B4J275 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV17A0A0B4J275 AL449106.1-201ENST00000608517 1980 ntBASIC22.21■■□□□ 1.15
TRAV17A0A0B4J275 KRT18P10-201ENST00000388836 1287 ntBASIC22.21■■□□□ 1.15
TRAV17A0A0B4J275 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.21■■□□□ 1.15
TRAV17A0A0B4J275 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.21■■□□□ 1.15
TRAV17A0A0B4J275 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRAV17A0A0B4J275 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.21■■□□□ 1.15
TRAV17A0A0B4J275 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.15
TRAV17A0A0B4J275 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 RPS2P7-201ENST00000447334 885 ntBASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 AL031848.2-201ENST00000607670 837 ntBASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 LINC01003-201ENST00000564834 1764 ntBASIC22.2■■□□□ 1.14
TRAV17A0A0B4J275 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAV17A0A0B4J275 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TRAV17A0A0B4J275 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAV17A0A0B4J275 AC103724.3-201ENST00000564481 992 ntBASIC22.19■■□□□ 1.14
TRAV17A0A0B4J275 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAV17A0A0B4J275 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
TRAV17A0A0B4J275 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAV17A0A0B4J275 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 HES6-204ENST00000409182 863 ntTSL 2 BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
TRAV17A0A0B4J275 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV17A0A0B4J275 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV17A0A0B4J275 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV17A0A0B4J275 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV17A0A0B4J275 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV17A0A0B4J275 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV17A0A0B4J275 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV17A0A0B4J275 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.17■■□□□ 1.14
TRAV17A0A0B4J275 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV17A0A0B4J275 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
TRAV17A0A0B4J275 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC22.16■■□□□ 1.14
TRAV17A0A0B4J275 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
TRAV17A0A0B4J275 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV17A0A0B4J275 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV17A0A0B4J275 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV17A0A0B4J275 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC22.15■■□□□ 1.14
TRAV17A0A0B4J275 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV17A0A0B4J275 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
TRAV17A0A0B4J275 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.15■■□□□ 1.14
TRAV17A0A0B4J275 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
TRAV17A0A0B4J275 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.14■■□□□ 1.13
TRAV17A0A0B4J275 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
TRAV17A0A0B4J275 LONRF2P2-201ENST00000439212 571 ntBASIC22.14■■□□□ 1.13
TRAV17A0A0B4J275 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.14■■□□□ 1.13
TRAV17A0A0B4J275 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV17A0A0B4J275 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
TRAV17A0A0B4J275 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms