Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 AP002414.3-201ENST00000589352 1468 ntBASIC18.49■□□□□ 0.55
CDH9Q9ULB4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH9Q9ULB4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 AC073621.1-201ENST00000392730 636 ntBASIC18.48■□□□□ 0.55
CDH9Q9ULB4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 AP000347.1-202ENST00000435868 847 ntBASIC18.48■□□□□ 0.55
CDH9Q9ULB4 AC098831.1-202ENST00000438821 336 ntBASIC18.48■□□□□ 0.55
CDH9Q9ULB4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 IGHV3-22-201ENST00000520721 359 ntBASIC18.48■□□□□ 0.55
CDH9Q9ULB4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 AL139424.1-201ENST00000607572 797 ntBASIC18.48■□□□□ 0.55
CDH9Q9ULB4 MIR1199-201ENST00000621445 119 ntBASIC18.48■□□□□ 0.55
CDH9Q9ULB4 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH9Q9ULB4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 LYSMD4-203ENST00000378904 2122 ntBASIC18.47■□□□□ 0.55
CDH9Q9ULB4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 LINC00982-205ENST00000420957 435 ntBASIC18.47■□□□□ 0.55
CDH9Q9ULB4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 AL356488.2-201ENST00000602755 427 ntBASIC18.47■□□□□ 0.55
CDH9Q9ULB4 PGM5P2-202ENST00000637225 1043 ntBASIC18.47■□□□□ 0.55
CDH9Q9ULB4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
CDH9Q9ULB4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH9Q9ULB4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms