Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.17■□□□□ 0.5
ATG4AQ8WYN0 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SLC25A1P3-201ENST00000395415 828 ntBASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 HOMER2P1-201ENST00000455653 964 ntBASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ATG4AQ8WYN0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 AC005915.1-201ENST00000624912 2018 ntBASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 AK4P3-201ENST00000418260 669 ntBASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms