Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.51■□□□□ 0.23
RFX3P48380 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RFX3P48380 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.51■□□□□ 0.23
RFX3P48380 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.51■□□□□ 0.23
RFX3P48380 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.51■□□□□ 0.23
RFX3P48380 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
RFX3P48380 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.51■□□□□ 0.23
RFX3P48380 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.51■□□□□ 0.23
RFX3P48380 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
RFX3P48380 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RFX3P48380 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RFX3P48380 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.51■□□□□ 0.23
RFX3P48380 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX3P48380 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RFX3P48380 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
RFX3P48380 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.5■□□□□ 0.23
RFX3P48380 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX3P48380 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RFX3P48380 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 AC006116.8-202ENST00000587620 1550 ntBASIC16.5■□□□□ 0.23
RFX3P48380 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX3P48380 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX3P48380 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RFX3P48380 KRT18P1-202ENST00000452408 1331 ntBASIC16.49■□□□□ 0.23
RFX3P48380 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
RFX3P48380 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
RFX3P48380 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.49■□□□□ 0.23
RFX3P48380 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX3P48380 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 AC011840.4-201ENST00000578471 627 ntBASIC16.49■□□□□ 0.23
RFX3P48380 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX3P48380 AC090616.6-201ENST00000582640 721 ntBASIC16.49■□□□□ 0.23
RFX3P48380 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.49■□□□□ 0.23
RFX3P48380 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 AC093458.2-201ENST00000623150 629 ntBASIC16.49■□□□□ 0.23
RFX3P48380 AC116407.4-201ENST00000623319 1061 ntBASIC16.49■□□□□ 0.23
RFX3P48380 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.49■□□□□ 0.23
RFX3P48380 AP000550.4-202ENST00000639755 178 ntBASIC16.49■□□□□ 0.23
RFX3P48380 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
RFX3P48380 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
RFX3P48380 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
RFX3P48380 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
RFX3P48380 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX3P48380 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.48■□□□□ 0.23
RFX3P48380 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RFX3P48380 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RFX3P48380 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RFX3P48380 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms