Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL8A1P27658 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 AC125437.2-201ENST00000625180 2167 ntBASIC15.26■□□□□ 0.03
COL8A1P27658 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
COL8A1P27658 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
COL8A1P27658 PTCHD3P3-201ENST00000403073 906 ntBASIC15.26■□□□□ 0.03
COL8A1P27658 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 AC005237.2-201ENST00000434368 219 ntBASIC15.26■□□□□ 0.03
COL8A1P27658 AC122714.2-201ENST00000502787 707 ntBASIC15.26■□□□□ 0.03
COL8A1P27658 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.26■□□□□ 0.03
COL8A1P27658 AC009093.7-201ENST00000623853 1223 ntBASIC15.26■□□□□ 0.03
COL8A1P27658 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 AC004408.2-201ENST00000623613 2777 ntBASIC15.26■□□□□ 0.03
COL8A1P27658 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.26■□□□□ 0.03
COL8A1P27658 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL8A1P27658 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.26■□□□□ 0.03
COL8A1P27658 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.26■□□□□ 0.03
COL8A1P27658 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC15.25■□□□□ 0.03
COL8A1P27658 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.25■□□□□ 0.03
COL8A1P27658 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
COL8A1P27658 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
COL8A1P27658 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.25■□□□□ 0.03
COL8A1P27658 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.25■□□□□ 0.03
COL8A1P27658 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC15.25■□□□□ 0.03
COL8A1P27658 SLC25A39P2-201ENST00000537614 270 ntBASIC15.25■□□□□ 0.03
COL8A1P27658 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.25■□□□□ 0.03
COL8A1P27658 AL390754.1-201ENST00000619088 582 ntBASIC15.25■□□□□ 0.03
COL8A1P27658 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
COL8A1P27658 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC15.25■□□□□ 0.03
COL8A1P27658 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
COL8A1P27658 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL8A1P27658 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
COL8A1P27658 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 TUBB3P1-201ENST00000405796 1332 ntBASIC15.24■□□□□ 0.03
COL8A1P27658 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
COL8A1P27658 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
COL8A1P27658 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
COL8A1P27658 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 CNN2P2-201ENST00000443536 909 ntBASIC15.24■□□□□ 0.03
COL8A1P27658 CNN2P3-201ENST00000450201 906 ntBASIC15.24■□□□□ 0.03
COL8A1P27658 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.24■□□□□ 0.03
COL8A1P27658 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.24■□□□□ 0.03
COL8A1P27658 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.24■□□□□ 0.03
COL8A1P27658 AC051619.7-201ENST00000568314 623 ntBASIC15.24■□□□□ 0.03
COL8A1P27658 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.24■□□□□ 0.03
COL8A1P27658 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.24■□□□□ 0.03
COL8A1P27658 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.24■□□□□ 0.03
COL8A1P27658 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms