Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 AC103564.2-201ENST00000432853 1299 ntBASIC17.47■□□□□ 0.39
MSH3P20585 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.47■□□□□ 0.39
MSH3P20585 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.47■□□□□ 0.39
MSH3P20585 LINC01711-201ENST00000598340 967 ntBASIC17.47■□□□□ 0.39
MSH3P20585 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH3P20585 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
MSH3P20585 SIRPAP1-201ENST00000448467 1770 ntBASIC17.46■□□□□ 0.39
MSH3P20585 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH3P20585 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH3P20585 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
MSH3P20585 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
MSH3P20585 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH3P20585 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH3P20585 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
MSH3P20585 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH3P20585 KRT18P31-201ENST00000506277 1292 ntBASIC17.46■□□□□ 0.39
MSH3P20585 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
MSH3P20585 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH3P20585 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH3P20585 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH3P20585 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
MSH3P20585 LINC01451-201ENST00000623792 534 ntBASIC17.46■□□□□ 0.39
MSH3P20585 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH3P20585 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
MSH3P20585 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.46■□□□□ 0.39
MSH3P20585 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
MSH3P20585 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH3P20585 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH3P20585 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.45■□□□□ 0.38
MSH3P20585 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 TSPY19P-201ENST00000418461 509 ntBASIC17.45■□□□□ 0.38
MSH3P20585 TSPY18P-201ENST00000441642 509 ntBASIC17.45■□□□□ 0.38
MSH3P20585 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.45■□□□□ 0.38
MSH3P20585 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.45■□□□□ 0.38
MSH3P20585 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
MSH3P20585 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH3P20585 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.44■□□□□ 0.38
MSH3P20585 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
MSH3P20585 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
MSH3P20585 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
MSH3P20585 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
MSH3P20585 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.44■□□□□ 0.38
MSH3P20585 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.44■□□□□ 0.38
MSH3P20585 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH3P20585 IGHV3-52-201ENST00000519770 353 ntBASIC17.44■□□□□ 0.38
MSH3P20585 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.44■□□□□ 0.38
MSH3P20585 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms